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ReducedExperiment

Bioc current

Containers and tools for dimensionally-reduced -omics representations

v1.4.0 · software · GPL (>= 3)
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Release Lineage

Entered 3.21 · Apr 16, 2025

Current · Requires R 4.6

1.0 In 3 of 49 releases 3.23

Description

Provides SummarizedExperiment-like containers for storing and manipulating dimensionally-reduced assay data. The ReducedExperiment classes allow users to simultaneously manipulate their original dataset and their decomposed data, in addition to other method-specific outputs like feature loadings. Implements utilities and specialised classes for the application of stabilised independent component analysis (sICA) and weighted gene correlation network analysis (WGCNA).

Code

Code metrics have not been computed for this package yet.

Topics

Software › AssayDomain › GeneExpression
Software › Infrastructure
Software › Infrastructure › DataRepresentation
Software
Software › StatisticalMethod › DimensionReduction
Software › WorkflowStep › Visualization › Network

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