Skip to content

ReadqPCR

Bioc current

Read qPCR data

v1.58.0 · Package record · software · LGPL-3

Release Lineage

Entered 2.9 · Nov 1, 2011

Current · Requires R 4.6

1.0 In 30 of 49 releases 3.23

Description

The package provides functions to read raw RT-qPCR data of different platforms.

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

11 7 exported

Complexity

5.9 avg / 23 max

Call network

11 nodes / 6 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

1,530

Files

34

Compiled share

0%

Has compiled src

No

Language breakdown

R 594 (38.8%)Docs 581 (38%)Vignettes 355 (23.2%)

API

Exported functions

13

Internal functions

4

Testing

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.14.0

System requirements

–

C++ standard

–

License

LGPL-3

License flags

SPDX valid, OSI approved

History

Versions

30

First release

2011-10-31

Latest release

2026-04-28

Avg cadence

183 days

Cold removal rate

–

Dep drift

1

LOC over versions

v2.9: 503 LOCv2.10: 505 LOCv2.11: 841 LOCv2.12: 1,524 LOCv2.13: 1,524 LOCv2.14: 1,524 LOCv3.0: 1,524 LOCv3.1: 1,524 LOCv3.2: 1,524 LOCv3.3: 1,524 LOCv3.4: 1,530 LOCv3.5: 1,530 LOCv3.6: 1,530 LOCv3.7: 1,530 LOCv3.8: 1,530 LOCv3.9: 1,530 LOCv3.10: 1,530 LOCv3.11: 1,530 LOCv3.12: 1,530 LOCv3.13: 1,530 LOCv3.14: 1,530 LOCv3.15: 1,530 LOCv3.16: 1,530 LOCv3.17: 1,530 LOCv3.18: 1,530 LOCv3.19: 1,530 LOCv3.20: 1,530 LOCv3.21: 1,530 LOCv3.22: 1,530 LOCv3.23: 1,530 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release
READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION
Help pages
9includes a package overview page
Examples that run
86%6 run in a plain check · 1 never run
Exported functions with examples
83%
Documented parameters
98%
Return-value docs
83%
Help pages citing references
100%

Repository practices

Bioconductor git repository

Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.

No development-tooling practices detected in the Bioconductor git repository.

Topics

Maintainer
James Perkins

Available on

CRANr2uBioconductorautoCRANCOPR

Depended on by (2)

Bioconductor (2)

People (from the free-text Author field)

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ReadqPCR")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ReadqPCR version 1.58.0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →

Privacy choices

These apply to this browser and are stored on this device only. Nothing about your choice is sent to us.

Read the privacy policy