QTLExperiment
Bioc currentS4 classes for QTL summary statistics and metadata
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the 'SummarizedExperiment' class and contains functions for creating, merging, and subsetting objects. 'QTLExperiment' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
33 8 exported
Complexity
2.7 avg / 10 max
Call network
33 nodes / 14 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,926
Files
64
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
26
Internal functions
25
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.35
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2023-10-24
Latest release
2026-04-28
Avg cadence
189 days
Cold removal rate
100%
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (1)
Bioconductor (1)
People
- Amelia Dunstone maintainer author
- Christina Del Azodi author
- Davis McCarthy contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("QTLExperiment")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-08, which the citation names so these numbers can be found later. More on citing and the projects behind them.