MinimumDistance
Bioc currentA Package for De Novo CNV Detection in Case-Parent Trios
Release Lineage
Entered 2.10 · Apr 2, 2012
Current · Requires R 4.6
Description
Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
157 16 exported
Complexity
2.7 avg / 31 max
Call network
157 nodes / 84 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
9,911
Files
123
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
41
Internal functions
140
Testing
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
20%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
29
First release
2012-05-01
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
17
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 44 (1 internal)includes a package overview page
- Examples that run
- 92%12 run in a plain check · 1 never run
- Exported functions with examples
- 38%
- Documented parameters
- 99%
- Return-value docs
- 17%
- Help pages citing references
- 2%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| F | data.frame | 1,000 × 3 | No other package |
| M | data.frame | 1,000 × 3 | No other package |
| O | data.frame | 1,000 × 3 | No other package |
| O1 | data.frame | 1,000 × 3 | No other package |
| baf | matrix | 550 × 6 | No other package |
| logRratio | matrix | 550 × 6 | No other package |
| md_exp | – | – | – |
| md_gr | – | – | – |
| md_granges | – | – | – |
| mdgr | – | – | – |
| pedigreeInfo | data.frame | 2 × 3 | No other package |
| pennCNV_MendelianProb | array | 5 × 5 × 5 × 5 × 5 × 5 | No other package |
| sample.sheet | data.frame | 6 × 7 | No other package |
| trioSet12023chr12 | – | – | – |
| trioSetList | – | – | – |
Topics
People
- Robert Scharpf author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MinimumDistance")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.