MSPrep
Bioc currentPackage for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
Package performs summarization of replicates, filtering by frequency, several different options for imputing missing data, and a variety of options for transforming, batch correcting, and normalizing data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
63 5 exported
Complexity
2.2 avg / 10 max
Call network
63 nodes / 101 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,020
Files
37
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
5
Internal functions
58
Testing & CI
Has tests
Yes
Test-to-code ratio
0.40
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
18.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 98%
- Return-value docs
- 100%
- References docs
- 63%
Topics
People
- Max McGrath author maintainer
- Grant Hughes author
- Sean Jacobson author
- Katerina Kechris author cph ths
- Matt Mulvahill author
- Harrison Pielke-lombardo author