FELLA
Bioc currentInterpretation and enrichment for metabolomics data
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
42 29 exported
Complexity
6 avg / 44 max
Call network
42 nodes / 74 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
20,077
Files
114
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
29
Internal functions
13
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-07-09
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 44 (8 internal)includes a package overview page
- Examples that run
- 97%32 run in a plain check · 1 never run
- Exported functions with examples
- 100%
- Documented parameters
- 97%
- Return-value docs
- 100%
- Help pages citing references
- 9%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
1 practice detected in the Bioconductor git repository
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| FELLA.sample | – | – | – |
| input.sample | vector | 30 elements | No other package |
Topics
People
- Sergio Picart-Armada author maintainer
- Francesc Fernandez-Albert author
- Alexandre Perera-Lluna author
Cite
Cite this package
Run in R for the authors' entry:
citation("FELLA")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1186/s12859-018-2487-5, 10.1371/journal.pone.0189012.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.