CTdata
Bioc currentData companion to CTexploreR
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
3 1 exported
Complexity
1.7 avg / 3 max
Call network
3 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,257
Files
77
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
2
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-06-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 31
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/uclouvain-cbio/ctdata on 2026-10-11.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| CpG_positions_all_prom_hg19 | – | – | – |
| all_genes_prelim | tibble | 24,488 × 36 | 2 packages |
| all_promoter_regions_hg19 | – | – | – |
| metadata | – | – | – |
Topics
Depended on by (1)
Bioconductor (1)
People
- Laurent Gatto author thesis advisor maintainer
- Charles De Smet thesis advisor
- Julie Devis author
- Anna Diacofotaki contributor
- Axelle Loriot author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("CTdata")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.