CBN2Path
Bioc currentCBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
232 39 exported
Complexity
4.8 avg / 20 max
Call network
232 nodes / 459 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
11,338
Files
116
Compiled share
63.5%
Has compiled src
Yes
Language breakdown
API
Exported functions
40
Internal functions
14
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
1 externalGNU Scientific Library (GSL)
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2025-10-29
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 41 (1 internal)includes a package overview page
- Examples that run
- 100%40 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 97%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- CBN2Path Vignette HTML
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/rockwillck/cbn2path on 2026-10-21.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| Posets | list | 219 elements | No other package |
Topics
People (from the free-text Author field)
- William Choi-Kim author maintainer
- Sayed-Rzgar Hosseini author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("CBN2Path")The repository also keeps a CITATION.cff.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.