BSgenome.Drerio.UCSC.danRer5.masked
Bioc currentFull masked genome sequences for Danio rerio (UCSC version danRer5)
Release Lineage
Entry release not yet recorded. Currently in release 3.23, requires R 4.6.
Description
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Code metrics have not been computed for this package yet.
Topics
People
Bioconductor Package Maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("BSgenome.Drerio.UCSC.danRer5.masked")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-09, which the citation names so these numbers can be found later. More on citing and the projects behind them.