ADAM
Bioc currentADAM: Activity and Diversity Analysis Module
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
31 2 exported
Complexity
4 avg / 24 max
Call network
31 nodes / 22 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,850
Files
26
Compiled share
1.6%
Has compiled src
Yes
Language breakdown
API
Exported functions
2
Internal functions
26
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
66.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
1
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 100%
Topics
Depended on by (1)
Bioconductor (1)
People
- Jose Rybarczyk Filho contributor maintainer ths
- André Luiz Molan author
- Giordano Bruno Sanches Seco contributor
- Agnes Takeda contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ADAM")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.