R Observatory: Metrics for TRAMPR version 1.0-10

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

TRAMPR

1.0-10Package record

'TRFLP' Analysis and Matching Package for R

0packages dependsuggested by 1

25.3Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Rich FitzJohnCRAN page ↗GitHub ↗

Matching terminal restriction fragment length polymorphism ('TRFLP') profiles between unknown samples and a database of known samples. 'TRAMPR' facilitates analysis of many unknown profiles at once, and provides tools for working directly with electrophoresis output through to generating summaries suitable for community analyses with R's rich set of statistical functions. 'TRAMPR' also resolves the issues of multiple 'TRFLP' profiles within a species, and shared 'TRFLP' profiles across species.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("TRAMPR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("richfitz/TRAMPR")

Development version from richfitz/TRAMPR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-trampr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-TRAMPR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-TRAMPR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Rich FitzJohn <rich.fitzjohn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

CRAN check page ↗

Slowest check: 1.2 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0-10

READMEYes · 10 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 25 (2 internal)includes a package overview page
Examples that run: 88%14 run in a plain check · 1 never run · 1 hold no code
Exported functions with examples: 73%
Documented parameters: 84%
Return-value docs: 55%
Help pages citing references: 8%

Vignettes (1)

Introduction to TRAMPR PDF

How these are measured

Downloads

25.3K

CRAN downloads in the past year

Rank #2,853 · ~69/day · ~2.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.8K30 days

5.1K90 days

25.3K1 year

Compare downloads with other packages →

Also on79 r2u9 autocran

How downloads are counted

Repository

richfitz/trampr ↗Account: richfitz

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-06-02 · Default branch at 1.0-11, ahead of CRAN 1.0-10 (checked 2026-10-25)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: not measured

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/richfitz/trampr on 2026-10-25.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Reproducibility and dev environment (1)

Makefile

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing TRAMPR adds no packages beyond those that come with R.

Depends (1)

R >= 2.4

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

Ecfun

How these are counted

Code & Tests

Datasets

People & History

People (2)

Rich FitzJohn

Author, Maintainer since 1.0-1 (2006)

Ian Dickie

Author

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
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R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0-10Latest
record
2022-02-07 · current release · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0-9
record
2020-02-28 · diff ↗
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R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
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R 3.4.0 released · 2017-04-21
1.0-8
record
2016-06-09 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10

Show 19 earlier eventsHide 19 earlier events

R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
1.0-7
record
2012-03-23 · diff ↗
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
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R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
R
R 2.10.0 released · 2009-10-26
1.0-6
record
2009-10-15 · diff ↗
1.0-5
record
2009-05-24 · diff ↗
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R 2.9.0 released · 2009-04-17
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R 2.8.0 released · 2008-10-20
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R 2.7.0 released · 2008-04-22
R
R 2.6.0 released · 2007-10-03
1.0-4
record
2007-06-05 · diff ↗
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R 2.5.0 released · 2007-04-24
1.0-2
record
2006-11-22 · diff ↗
1.0-1
record
2006-11-13
R
R 2.4.0 released · 2006-10-03

Package metadata

First published: 2006-11-13
Total releases: 9 / 20 yrs
License: GPL-2 OSI
Minimum R: ≥ 2.4
Bundled data: 32 KB / 2 files
Download size: 316 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("TRAMPR")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for TRAMPR version 1.0-10 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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