R Observatory: Metrics for ipd version 0.4.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ipd

0.4.1Package record

Inference on Predicted Data

0packages depend

4.1Kdownloads / year

1.9%test coverage

13/13flavors OK

Overview

About

Maintained by Stephen SalernoCRAN page ↗GitHub ↗Website ↗Issues ↗

Performs valid statistical inference on predicted data (IPD) using recent methods, where for a subset of the data, the outcomes have been predicted by an algorithm. Provides a wrapper function with specified defaults for the type of model and method to be used for estimation and inference. Further provides methods for tidying and summarizing results. Salerno et al., (2025) doi:10.1093/bioinformatics/btaf055.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ipd", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ipd-tools/ipd")

Development version from ipd-tools/ipd. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ipd

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ipd

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ipd

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-10-25
ERROR12 OK, 1 ERROR2026-10-24
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 5 earlier changesHide 5 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-02
ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-18
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.4.1

READMEYes · 1,110 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · does not mention 0.4.1Citation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 67 (6 internal)includes a package overview page
Examples that run: 100%34 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Getting Started with the ipd Package

How these are measured

Downloads

4.1K

CRAN downloads in the past year

Rank #9,393 · ~11/day · ~346/mo

Releases R versions

Daily download trend is not available in this view yet.

33430 days

1.1K90 days

4.1K1 year

Compare downloads with other packages →

Also on95 r2u5 autocran

How downloads are counted

Repository

ipd-tools/ipd ↗Organization: ipd-tools

17Stars

5Forks

2Open issues

0Open PRs

1Releases

201Commits

4Commit identities

201 commits · Last activity 2026-03-11 · +6.3% stars, 30d · Default branch at 0.4.1.9000, ahead of CRAN 0.4.1 (checked 2026-10-25)

Responsiveness

How these are sampled

PRs merged (all time): 88%
Median days to close, 50 most recently updated closed issues: 48
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-10-02 · 92026-09-27 · 17

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/ipd-tools/ipd on 2026-10-25.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-03-11 · The repository has a site deploy workflow

pkgdown site last built 2026-03-11

Coverage (1)

Coverage reporting

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Installing ipd adds 67 packages (38 with compiled code, 50 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 4.4.0

Imports (10)

methodsgenerics caret gam rangersplinesstatsMASSrandomForest tibble

LinkingTo (0)

none

Suggests (9)

knitr patchwork rmarkdown spelling testthat tidyverse xfun BiocStyle BiocManager

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (11)

Stephen Salerno

Awan Afiaz

Author

David Cheng

Author · added in 0.4.0

Jianhui Gao

Author · added in 0.4.0

Jesse Gronsbell

Author · added in 0.4.0

Author

Author

Author

Author

Author

Author

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.4.1Latest
record
2026-03-11 · current release · diff ↗
0.4.0
record
2026-03-06 · diff ↗ ·
removed 24 exports
A, Sigma_cal, calc_lhat_glm, compute_cdf, compute_cdf_diff, est_ini, link_Hessian, link_grad, log1pexp, logistic_get_stats, mean_psi, mean_psi_pop, ols, ols_get_stats, optim_est, optim_weights, psi, pspa_y, rectified_cdf, rectified_p_value, sim_data_y, wls, zconfint_generic, zstat_generic

added 7 exports
chen_logistic, chen_ols, chen_poisson, pdc_logistic, pdc_ols, pdc_poisson, ppi_a_ols
R
R 4.5.0 released · 2025-04-11
0.1.4
record
2025-01-07 · diff ↗
0.1.3
record
2024-12-03 · diff ↗
0.1.2
record
2024-10-24
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-10-24
Total releases: 5 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.4.0
Download size: 1.3 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("ipd")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/btaf055.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ipd version 0.4.1 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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