mpra
Bioc currentAnalyze massively parallel reporter assays
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
15 10 exported
Complexity
3.1 avg / 12 max
Call network
15 nodes / 30 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,054
Files
24
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
5
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-10-30
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 7includes a package overview page
- Examples that run
- 100%7 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 57%
- mpra User's Guide HTML
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/hansenlab/mpra on 2026-10-11.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| mpraSetAggExample | – | – | – |
| mpraSetAllelicExample | – | – | – |
| mpraSetExample | – | – | – |
Topics
Depended on by (1)
Bioconductor (1)
People
- Leslie Myint maintainer author
- Kasper D. Hansen author
Cite
Cite this package
Run in R for the authors' entry:
citation("mpra")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1186/s12864-019-5556-x.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.