contsurvplot

Running examples in ‘contsurvplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: curve_cont
> ### Title: Estimate Counterfactual Survival or Failure Probabilities for
> ###   Levels of a Continuous Variable
> ### Aliases: curve_cont
> 
> ### ** Examples
> 
> library(contsurvplot)
> library(riskRegression)
riskRegression version 2026.03.11
> library(survival)
> 
> # using data from the survival package
> data(nafld, package="survival")
> 
> # take a random sample to keep example fast
> set.seed(42)
> nafld1 <- nafld1[sample(nrow(nafld1), 150), ]
> 
> # fit cox-model with age
> model <- coxph(Surv(futime, status) ~ age, data=nafld1, x=TRUE)
> 
> # estimate survival probability at some points in time, for
> # a range of age values
> plotdata <- curve_cont(data=nafld1,
+                        variable="age",
+                        model=model,
+                        horizon=c(50, 60, 70, 80),
+                        times=c(1000, 2000, 3000, 4000))
Error in a$specials[[i]] : subscript out of bounds
Calls: curve_cont ... predictCox -> coxVariableName -> delete.response -> off
Execution halted

Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown

Quitting from introduction.Rmd:93-96 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. └─contsurvplot::curve_cont(...)
 2.   └─contsurvplot:::one_iteration(...)
 3.     ├─riskRegression::predictRisk(...)
 4.     └─riskRegression:::predictRisk.coxph(...)
 5.       └─riskRegression::predictCox(...)
 6.         └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
 7.           └─stats::delete.response(...)
 8.             └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted

Running ‘testthat.R’ [13s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(contsurvplot)
  Please cite as: 
  
  Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630.
  > library(survival)
  > library(testthat)
  > 
  > test_check("contsurvplot")
  Saving _problems/test_curve_cont-13.R
  Saving _problems/test_curve_cont-20.R
  Saving _problems/test_curve_cont-29.R
  Saving _problems/test_curve_cont-36.R
  starting worker pid=3856762 on localhost:11643 at 16:32:39.392
  starting worker pid=3856763 on localhost:11643 at 16:32:39.438
  Loading required package: contsurvplot
  Please cite as: 
  
  Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630.
  loaded contsurvplot and set parent environment
  Loading required packa
...[truncated]...
ot-change-horizon.svg', 'plot_surv_area/plot-cif.svg',
  'plot_surv_area/plot-custom-colors.svg', 'plot_surv_area/plot-defaults.svg',
  'plot_surv_area/plot-discrete-bins.svg',
  'plot_surv_area/plot-discrete-round.svg',
  'plot_surv_area/plot-lots-of-stuff.svg', 'plot_surv_area/plot-sep-lines.svg',
  'plot_surv_area/plot-with-group.svg',
  'plot_surv_area/plot-with-kaplan-meier.svg',
  'plot_surv_area/plot-with-nonmonotonic.svg',
  'plot_surv_at_t/plot-change-horizon.svg', …,
  'plot_surv_rmtl/plot-with-group-ci.svg', and
  'plot_surv_rmtl/plot-with-group.svg'
  Error:
  ! Test failures.
  Execution halted
  Error in unserialize(node$con) : 
    error reading from connection '->localhost:11643'
  Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
  Execution halted
  Error in unserialize(node$con) : 
    error reading from connection '->localhost:11643'
  Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
  Execution halted