multiMiR
Bioc currentIntegration of multiple microRNA-target databases with their disease and drug associations
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
77 20 exported
Complexity
2.6 avg / 36 max
Call network
77 nodes / 106 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,780
Files
57
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
57
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
50%
Unsafe pattern score
0
Dep constraint coverage
22.2%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2018-02-09
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 31 (23 internal)includes a package overview page
- Examples that run
- 100%6 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 3%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/kechrislab/multimir on 2026-10-21.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| counts_table | data.frame | 492 × 6 | No other package |
| strains_factor | factor | 6 elements | No other package |
Topics
Suggested by (1)
People
- Spencer Mahaffey maintainer author
- Katerina Kechris author copyright holder thesis advisor
- Matt Mulvahill author
- Yuanbin Ru author
Cite
Cite this package
Run in R for the authors' entry:
citation("multiMiR")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/nar/gku631.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.