Packages
109 packages on Bioconductor tagged SingleCell or SequencingData or CancerData, most distinct IPs first
SingleCell, SequencingData and CancerData in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| ALL A data packageRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 4,171 | 7 |
| HSMMSingleCell Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell | Cole Trapnell | experiment | 5 May 2026 | 3,553 | 0 |
| Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi | Wei Shi | software | 28 Apr 2026 | 2,951 | 8 |
| airway RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love | Michael Love | experiment | 5 May 2026 | 2,854 | 25 |
| bcellViper Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez | Mariano Javier Alvarez | experiment | 5 May 2026 | 2,177 | 7 |
| pasilla Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes | Alejandro Reyes | experiment | 5 May 2026 | 1,554 | 108 |
| golubEsets exprSets for golub leukemia dataVince Carey | Vince Carey | experiment | 5 May 2026 | 1,207 | 7 |
| RNAseqData.HNRNPC.bam.chr14 Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès | Hervé Pagès | experiment | 5 May 2026 | 1,069 | 0 |
| bladderbatch Bladder gene expression data illustrating batch effectsJeffrey T. Leek | Jeffrey T. Leek | experiment | 5 May 2026 | 1,049 | 7 |
| TRONCO TRONCO, an R package for TRanslational ONCOlogyLuca De Sano | Luca De Sano | software | 28 Apr 2026 | 1,025 | 47 |
| pasillaBamSubset Subset of BAM files from "Pasilla" experimentHervé Pagès | Hervé Pagès | experiment | 5 May 2026 | 997 | 0 |
| GSVAdata Data employed in the vignette of the GSVA packageRobert Castelo | Robert Castelo | experiment | 28 Jul 2026 | 955 | 78 |
| immunoClust immunoClust - Automated Pipeline for Population Detection in Flow CytometryTill Soerensen | Till Soerensen | software | 28 Apr 2026 | 918 | 24 |
| zebrafishRNASeq Zebrafish RNA-Seq Experimental Data from Ferreira et al. (2014)Davide Risso | Davide Risso | experiment | 5 May 2026 | 702 | 0 |
| Illumina450ProbeVariants.db Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probesTiffany Morris | Tiffany Morris | experiment | 5 May 2026 | 690 | 0 |
| lungExpression ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paperRobert Scharpf | Robert Scharpf | experiment | 5 May 2026 | 682 | 7 |
| gageData Auxillary data for gage packageWeijun Luo | Weijun Luo | experiment | 5 May 2026 | 623 | 0 |
| yeastCC Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray dataSandrine Dudoit | Sandrine Dudoit | experiment | 5 May 2026 | 592 | 7 |
| ALLMLL A subset of arrays from a large acute lymphoblastic leukemia (ALL) studyB. M. Bolstad | B. M. Bolstad | experiment | 5 May 2026 | 590 | 12 |
| h5vcData Example data for the h5vc packagePaul Theodor Pyl | Paul Theodor Pyl | experiment | 5 May 2026 | 587 | 0 |
| yeastNagalakshmi Yeast genome RNA sequencing data based on Nagalakshmi et. al.Bioconductor Package Maintainer | Bioconductor Package Maintainer | experiment | 5 May 2026 | 587 | 0 |
| harbChIP Experimental Data Package: harbChIPVJ Carey | VJ Carey | experiment | 5 May 2026 | 581 | 16 |
| DLBCL Diffuse large B-cell lymphoma expression dataMarcus Dittrich | Marcus Dittrich | experiment | 5 May 2026 | 568 | 9 |
| DMRcatedata Data Package for DMRcateTim Peters | Tim Peters | experiment | 5 May 2026 | 522 | 208 |
| CLL A Package for CLL Gene Expression DataRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 508 | 12 |
| maqcExpression4plex Sample Expression Data - MAQC / HG18 - NimbleGenBenilton Carvalho | Benilton Carvalho | experiment | 5 May 2026 | 506 | 0 |
| leukemiasEset Leukemia's microarray gene expression data (expressionSet).Sara Aibar | Sara Aibar | experiment | 5 May 2026 | 496 | 7 |
| parathyroidSE RangedSummarizedExperiment for RNA-Seq of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012. | no date on record | 464 | |||
| colonCA exprSet for Alon et al. (1999) colon cancer dataW Sylvia Merk | W Sylvia Merk | experiment | 5 May 2026 | 446 | 7 |