Packages

1,048 packages on Bioconductor tagged AnnotationData or Classification, most distinct IPs first

AnnotationData and Classification in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer	Bioconductor Maintainer	annotation	no date on record	36,797	0
GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	33,694	42
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
BiocNeighbors Nearest Neighbor Detection for Bioconductor PackagesAaron Lun	Aaron Lun	software	28 Apr 2026	16,619	24
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
ensembldb Utilities to create and use Ensembl-based annotation databasesJohannes Rainer	Johannes Rainer	software	25 May 2026	11,000	80
phyloseq Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie	Paul J. McMurdie	software	28 Apr 2026	8,379	66
reactome.db A set of annotation maps for reactomeWillem Ligtenberg	Willem Ligtenberg	annotation	no date on record	7,578	42
SingleR Reference-Based Single-Cell RNA-Seq AnnotationAaron Lun	Aaron Lun	software	10 Sep 2026	6,761	28
DirichletMultinomial Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome DataMartin Morgan	Martin Morgan	software	28 Sep 2026	6,490	9
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
mixOmics Omics Data Integration ProjectDerek Lei	Derek Lei	software	28 Apr 2026	5,370	83
HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu	Erqiang Hu	annotation	no date on record	5,277	42
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
dada2 Accurate, high-resolution sample inference from amplicon sequencing dataBenjamin Callahan	Benjamin Callahan	software	28 Apr 2026	4,206	75
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
maftools Summarize, Analyze and Visualize MAF FilesAnand Mayakonda	Anand Mayakonda	software	28 Apr 2026	3,523	26
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
org.Rn.eg.db Genome wide annotation for RatBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,202	42
decontam Identify Contaminants in Marker-gene and Metagenomics Sequencing DataBenjamin Callahan	Benjamin Callahan	software	28 Apr 2026	3,009	30
interactiveDisplayBase Base package for enabling powerful shiny web displays of Bioconductor objects			no date on record	2,988
ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot	Etienne A. Thevenot	software	28 Apr 2026	2,969	97
metagenomeSeq Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson	Joseph N. Paulson	software	28 Apr 2026	2,924	32
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,192	75
BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,152	58
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
fastseg fastseg - a fast segmentation algorithmAlexander Blume	Alexander Blume	software	28 Apr 2026	1,884	13