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Topic: Transcription or MicroarrayData or SequencingData

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Release: Release 1.7 (2005)

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20 packages on Bioconductor tagged Transcription or MicroarrayData or SequencingData, most distinct IPs first

Transcription, MicroarrayData and SequencingData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026558144
simpleaffy
Very simple high level analysis of Affymetrix data		no date on record517
davidTiling
Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber		Wolfgang Huberexperiment5 May 202638476
splicegear
splicegear		no date on record372
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20263670
Hiiragi2013
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineagesWolfgang Huber		Wolfgang Huberexperiment23 Jun 202633867
pd.atdschip.tiling
Platform Design Info for Affymetrix Atdschip_tilingKristof De Beuf		Kristof De Beufexperiment5 May 202631953
ConnectivityMap
Functional connections between drugs, genes and diseases as revealed by common gene-expression changesPaul Shannon		Paul Shannonexperiment5 May 20262810
mammaPrintData
RGLists from the Glas and Buyse breast cancer studiesLuigi Marchionni		Luigi Marchionniexperiment5 May 20262690
curatedBreastData
Curated breast cancer gene expression data with survival and treatment informationLevi Waldron		Levi Waldronexperiment23 Jul 202626877
FlowSorted.DLPFC.450k
Illumina HumanMethylation data on sorted frontal cortex cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026258144
MMDiffBamSubset
Example ChIP-Seq data for the MMDiff packageGabriele Schweikert		Gabriele Schweikertexperiment5 May 20262500
FlowSorted.CordBloodNorway.450k
Illumina HumanMethylation data on sorted cord blood cell populationskristina gervin		kristina gervinexperiment5 May 2026243144
Fletcher2013b
Master regulators of FGFR2 signalling and breast cancer riskMauro Castro		Mauro Castroexperiment5 May 2026236153
ccdata
Data for Combination Connectivity Mapping (ccmap) PackageAlex Pickering		Alex Pickeringexperiment5 May 20262330
ListerEtAlBSseq
BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009Mattia Furlan		Mattia Furlanexperiment5 May 2026230159
FlowSorted.CordBlood.450k
Illumina 450k data on sorted cord blood cellsShan V. Andrews		Shan V. Andrewsexperiment5 May 2026221144