Packages
21 packages on Bioconductor tagged VariantAnnotation or Bayesian or MicroarrayData, most distinct IPs first
VariantAnnotation, Bayesian and MicroarrayData in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| DESeq2 Differential gene expression analysis based on the negative binomial distributionMichael Love | Michael Love | software | 28 Apr 2026 | 31,845 | 54 |
| puma Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu | Xuejun Liu | software | 28 Apr 2026 | 1,033 | 55 |
| DEqMS a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.Yafeng Zhu | Yafeng Zhu | software | 28 Apr 2026 | 901 | 34 |
| musicatk Mutational Signature Comprehensive Analysis ToolkitJoshua D. Campbell | Joshua D. Campbell | software | 28 Apr 2026 | 726 | 275 |
| appreci8R appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPVSarah Sandmann | Sarah Sandmann | software | 28 Apr 2026 | 706 | 162 |
| fibroEset exprSet for Karaman et al. (2003) fibroblasts dataSylvia Merk | Sylvia Merk | experiment | 5 May 2026 | 632 | 7 |
| lumiBarnes Barnes Benchmark Illumina Tissues Titration DataPan Du | Pan Du | experiment | 5 May 2026 | 484 | 166 |
| GIGSEA Genotype Imputed Gene Set Enrichment AnalysisShijia Zhu | Shijia Zhu | software | 28 Apr 2026 | 466 | 11 |
| CLL A Package for CLL Gene Expression DataRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 439 | 12 |
| SpikeInSubset Part of Affymetrix's Spike-In Experiment DataRobert D Shear | Robert D Shear | experiment | 5 May 2026 | 430 | 12 |
| AmpAffyExample Example of Amplified DataRobert D Shear | Robert D Shear | experiment | 5 May 2026 | 400 | 12 |
| estrogen Microarray dataset that can be used as example for 2x2 factorial designsWolfgang Huber | Wolfgang Huber | experiment | 5 May 2026 | 382 | 0 |
| colonCA exprSet for Alon et al. (1999) colon cancer dataW Sylvia Merk | W Sylvia Merk | experiment | 5 May 2026 | 365 | 7 |
| pumadata Various data sets for use with the puma packageXuejun liu | Xuejun liu | experiment | 5 May 2026 | 335 | 56 |
| tinesath1probe Probe sequence data for microarrays of type tinesath1Tine Casneuf | Tine Casneuf | experiment | 5 May 2026 | 328 | 42 |
| beta7 Rodriguez et al. (2004) Differential Gene Expression by Memory/Effector T Helper Cells Bearing the Gut-Homing Receptor Integrin alpha4 beta7.Jean Yang | Jean Yang | experiment | 5 May 2026 | 320 | 8 |
| fabiaData Data sets for FABIA (Factor Analysis for Bicluster Acquisition)Sepp Hochreiter | Sepp Hochreiter | experiment | 5 May 2026 | 318 | 7 |
| davidTiling Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber | Wolfgang Huber | experiment | 5 May 2026 | 315 | 76 |
| AffymetrixDataTestFiles Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for TestingHenrik Bengtsson | Henrik Bengtsson | experiment | 5 May 2026 | 300 | 0 |
| rcellminerData rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell LinesAugustin Luna | Augustin Luna | experiment | 5 May 2026 | 284 | 7 |
| LiebermanAidenHiC2009 Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)Felix Klein | Felix Klein | experiment | 5 May 2026 | 191 | 10 |