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Topic: MassSpectrometry or Proteomics or oligo

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20 packages on Bioconductor tagged MassSpectrometry or Proteomics or oligo, most distinct IPs first

MassSpectrometry, Proteomics and oligo in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Spectra
Spectra Infrastructure for Mass Spectrometry DataRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware9 Jun 20264,46530
statTarget
Statistical Analysis of Molecular ProfilesHemi Luan		Hemi Luansoftware28 Apr 202690526
SingleCellSignalR
Cell Signalling Using Single-Cell RNA-seq or Proteomics DataJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026900203
specL
specL - Prepare Peptide Spectrum Matches for Use in Targeted ProteomicsChristian Panse		Christian Pansesoftware28 Apr 202689832
scp
Mass Spectrometry-Based Single-Cell Proteomics Data AnalysisChristophe Vanderaa		Christophe Vanderaasoftware28 Apr 2026869108
scDataviz
scDataviz: single cell dataviz and downstream analysesKevin Blighe		Kevin Blighesoftware28 Apr 2026853175
SWATH2stats
Transform and Filter SWATH Data for Statistical PackagesPeter Blattmann		Peter Blattmannsoftware28 Apr 202679476
SBGNview
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"Weijun Luo		Weijun Luosoftware28 Apr 202679285
SIMAT
GC-SIM-MS data processing and alaysis toolM. R. Nezami Ranjbar		M. R. Nezami Ranjbarsoftware28 Apr 202678140
SubCellBarCode
SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteomeTaner Arslan		Taner Arslansoftware28 Apr 2026758133
SpatialOmicsOverlay
Spatial Overlay for Omic Data from Nanostring GeoMx DataMaddy Griswold		Maddy Griswoldsoftware28 Apr 2026705159
SDAMS
Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing DataYuntong Li		Yuntong Lisoftware28 Apr 202668951
SMAD
Statistical Modelling of AP-MS Data (SMAD)Qingzhou Zhang		Qingzhou Zhangsoftware28 Apr 202659330
sparsenetgls
Using Gaussian graphical structue learning estimation in generalized least squared regression for multivariate normal regressionIrene Zeng		Irene Zengsoftware28 Apr 202659029
SpectriPy
Enhancing Cross-Language Mass Spectrometry Data Analysis with R and PythonJohannes Rainer		Johannes Rainersoftware12 May 202650851
spillR
Spillover Compensation in Mass Cytometry DataMarco Guazzini		Marco Guazzinisoftware28 Apr 2026488179
squallms
Speedy quality assurance via lasso labeling for LC-MS dataWilliam Kumler		William Kumlersoftware28 Apr 2026473186
SpectraQL
MassQL support for SpectraJohannes Rainer		Johannes Rainersoftware29 Apr 202645831
sfi
Data analysis for Single File Injections (SFIs) mode LC-MS analysisMiao YU		Miao YUsoftware28 Apr 202636476
SmartPhos
A phosphoproteomics data analysis package with an interactive ShinyAppShubham Agrawal		Shubham Agrawalsoftware28 Apr 2026301223