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Topic: AnnotationData or BSgenome or Microarray

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219 packages on Bioconductor tagged AnnotationData or BSgenome or Microarray, most distinct IPs first

AnnotationData, BSgenome and Microarray in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
piano
Platform for integrative analysis of omics dataLeif Varemo Wigge		Leif Varemo Wiggesoftware28 Apr 20261,50994
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,29655
phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.Evarist Planet		Evarist Planetsoftware28 Apr 20261,104139
pandaR
PANDA AlgorithmJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20261,09337
PAA
PAA (Protein Array Analyzer)Michael Turewicz		Michael Turewiczsoftware28 Apr 20261,08484
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479
PFAM.db
A set of protein ID mappings for PFAMBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,03842
PADOG
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)Adi L. Tarca		Adi L. Tarcasoftware28 Apr 20261,02659
pvca
Principal Variance Component Analysis (PVCA)Jianying LI		Jianying LIsoftware28 Apr 202699549
phantasus
Visual and interactive gene expression analysisAlexey Sergushichev		Alexey Sergushichevsoftware28 Apr 2026992160
Pigengene
Infers biological signatures from gene expression dataHabil Zare		Habil Zaresoftware28 Apr 2026938191
profileplyr
Visualization and annotation of read signal over genomic ranges with profileplyrDoug Barrows		Doug Barrowssoftware7 Jun 2026919203
prebs
Probe region expression estimation for RNA-seq data for improved microarray comparabilityKarolis Uziela		Karolis Uzielasoftware28 Apr 2026896113
pepStat
Statistical analysis of peptide microarraysGregory C Imholte		Gregory C Imholtesoftware28 Apr 202689641
Pviz
Peptide Annotation and Data Visualization using GvizRenan Sauteraud		Renan Sauteraudsoftware28 Apr 2026856151
PathoStat
PathoStat Statistical Microbiome Analysis PackageSolaiappan Manimaran		Solaiappan Manimaransoftware28 Apr 2026837203
pvac
PCA-based gene filtering for Affymetrix arraysJun Lu		Jun Lusoftware28 Apr 202683712
planet
Placental DNA methylation analysis toolsVictor Yuan		Victor Yuansoftware28 Apr 202683119
PLPE
Local Pooled Error Test for Differential Expression with Paired High-throughput DataSoo-heang Eo		Soo-heang Eosoftware28 Apr 202682310
PROMISE
PRojection Onto the Most Interesting Statistical EvidenceStan Pounds		Stan Poundssoftware28 Apr 202681447
PECA
Probe-level Expression Change AveragingTomi Suomi		Tomi Suomisoftware28 Apr 2026796101
pd.hugene.1.0.st.v1
Platform Design Info for Affymetrix HuGene-1_0-st-v1Benilton Carvalho		Benilton Carvalhoannotationno date on record72653
protGear
Protein Micro Array Data Management and Interactive VisualizationKennedy Mwai		Kennedy Mwaisoftware28 Apr 2026724196
pickgene
Adaptive Gene Picking for Microarray Expression Data AnalysisBrian S. Yandell		Brian S. Yandellsoftware28 Apr 20267126
pd.hg.u95av2
Platform Design Info for The Manufacturer's Name HG_U95Av2Benilton Carvalho		Benilton Carvalhoannotationno date on record56253
PolyPhen.Hsapiens.dbSNP131
PolyPhen Predictions for Homo sapiens dbSNP build 131Valerie Obenchain		Valerie Obenchainannotationno date on record56077
pd.hg.u133.plus.2
Platform Design Info for The Manufacturer's Name HG-U133_Plus_2Benilton Carvalho		Benilton Carvalhoannotationno date on record54653
pd.huex.1.0.st.v2
Platform Design Info for Affymetrix HuEx-1_0-st-v2Benilton Carvalho		Benilton Carvalhoannotationno date on record50653
pd.hg.u133a
Platform Design Info for The Manufacturer's Name HG-U133ABenilton Carvalho		Benilton Carvalhoannotationno date on record50453