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Topic: MassSpectrometry or Proteomics or DNAMethylation

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18 packages on Bioconductor tagged MassSpectrometry or Proteomics or DNAMethylation, most distinct IPs first

MassSpectrometry, Proteomics and DNAMethylation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
DSS
Dispersion shrinkage for sequencing dataHao Wu		Hao Wusoftware28 Apr 20261,70291
dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite SequencingKeegan Korthauer		Keegan Korthauersoftware28 Apr 20261,201149
diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clusteringLukas M. Weber		Lukas M. Webersoftware16 Jul 20261,152146
DMRcaller
Differentially Methylated Regions CallerNicolae Radu Zabet		Nicolae Radu Zabetsoftware28 Apr 20261,06681
DEqMS
a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.Yafeng Zhu		Yafeng Zhusoftware28 Apr 20261,05334
DAPAR
Tools for the Differential Analysis of Proteins Abundance with RSamuel Wieczorek		Samuel Wieczoreksoftware28 Apr 2026985136
DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regionsStephany Orjuela		Stephany Orjuelasoftware28 Apr 2026936114
Doscheda
A DownStream Chemo-Proteomics Analysis PipelineBruno Contrino		Bruno Contrinosoftware28 Apr 2026921160
deconvR
Simulation and Deconvolution of Omic ProfilesIrem B. Gündüz		Irem B. Gündüzsoftware28 Apr 2026824184
DominoEffect
Identification and Annotation of Protein Hotspot ResiduesMarija Buljan		Marija Buljansoftware28 Apr 202676599
drawProteins
Package to Draw Protein Schematics from Uniprot API outputPaul Brennan		Paul Brennansoftware28 Apr 202675753
diffuStats
Diffusion scores on biological networksSergio Picart-Armada		Sergio Picart-Armadasoftware28 Apr 202672939
deltaGseg
deltaGsegDiana Low		Diana Lowsoftware28 Apr 202671345
drugTargetInteractions
Drug-Target InteractionsThomas Girke		Thomas Girkesoftware28 Apr 2026609105
dmGsea
Efficient Gene Set Enrichment Analysis for DNA Methylation DataZongli Xu		Zongli Xusoftware24 Sep 202648461
DNEA
Differential Network Enrichment Analysis for Biological DataChristopher Patsalis		Christopher Patsalissoftware28 Apr 2026467129
decemedip
hierarchical Bayesian modeling for cell type deconvolution of immunoprecipitation-based DNA methylomeNing Shen		Ning Shensoftware28 Apr 2026385144