zoolog

1.1.0

Zooarchaeological Analysis with Log-Ratios

0packages depend

2.5Kdownloads / year

52.0%test coverage

11/13checks pass

Overview

About

Maintained by Jose M PozoFirst published 2021-02-178 releasesCRAN page ↗

Includes functions and reference data to generate and manipulate log-ratios (also known as log size index (LSI) values) from measurements obtained on zooarchaeological material. Log ratios are used to compare the relative (rather than the absolute) dimensions of animals from archaeological contexts (Meadow 1999, ISBN: 9783896463883). zoolog is also able to seamlessly integrate data and references with heterogeneous nomenclature, which is internally managed by a zoolog thesaurus. A preliminary version of the zoolog methods was first used by Trentacoste, Nieto-Espinet, and Valenzuela-Lamas (2018) doi:10.1371/journal.pone.0208109.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("zoolog", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-zoolog

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-zoolog

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-zoolog

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.5 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.05

52.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 309 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 81%
Return-value docs: 100%
References docs: 15%

Downloads

2.5K

CRAN downloads in the past year

Rank #14,977 · ~7/day · ~209/mo

Releases R versions

Daily download trend is not available in this view yet.

23130 days

74590 days

2.5K1 year

Compare downloads with other packages →

Also on88 r2u39 autocran

Repository

GitHub ↗ josempozo/zoolog

6Stars

2Forks

0Open issues

0Open PRs

7Releases

317Commits

2Contributors

License GPL-3.0 · 317 commits · Last activity 2026-06-08

Stars over time

2022-05-27 · 62026-07-07 · 6

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/josempozo/zoolog on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0

Imports (3)

utilsstringi Rdpack

LinkingTo (0)

none

Suggests (5)

testthat knitr rmarkdown ggplot2stats

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,830 (49%)Rd 1,385 (37%)Vignettes 521 (14%)

Code characteristics

Cyclomatic complexity: 2.0 median / 11 max
Test cases: 8 / 0.05 per code line

Test coverage

Line coverage

52%

Expression

54.0%

Tests / Examples

52.0% / 77% ex

Functions

42 18 exported

Complexity

2.9 avg / 11 max

Call network

42 nodes / 45 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

42 functions

Function	Cyclo	Coverage
AddToThesaurus exp	4	0%
AssembleReference exp	3	0%
InCategory exp	1	0%
NewThesaurus exp	1	0%
ReadThesaurus exp	5	0%
ReadThesaurusSet exp	1	0%

Datasets

Bundled datasets · 2

Name	Class	Rows × Cols	Also ships in
referenceSets	data.frame	4 × 15	–
zoologTaxonomy	data.frame	16 × 5	–

People & History

People (5)

Maintainer (1)

Jose M Pozo

Author, Maintainer

Authors (5)

Jose M Pozo

Author, Maintainer

Silvia Guimarães Chiarelli

Author

Ariadna Nieto-Espinet

Author

Angela Trentacoste

Author

Silvia Valenzuela-Lamas

Author

Listed in earlier versions (1)

Jose M

no longer listed · 0.2.1 to 1.1.0

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1.0Latest
2022-08-26 · current release · diff ↗
1.0.1
2022-05-03 · diff ↗
1.0.0
2022-05-02 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.4.1
2021-09-02 · diff ↗
0.4.0
2021-08-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.3.1
2021-05-04 · diff ↗
0.3.0
2021-04-07 · diff ↗
0.2.1
2021-02-17
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-02-17
Total releases: 8 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.0
Bundled data: 16 KB / 5 files
Download size: 849 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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