R Observatory: Metrics for zetadiv version 1.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

zetadiv

1.3.0Package record

Functions to Compute Compositional Turnover Using Zeta Diversity

0packages dependsuggested by 1

5.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Guillaume LatombeCRAN page ↗

Functions to compute compositional turnover using zeta-diversity, the number of species shared by multiple assemblages. The package includes functions to compute zeta-diversity for a specific number of assemblages and to compute zeta-diversity for a range of numbers of assemblages. It also includes functions to explain how zeta-diversity varies with distance and with differences in environmental variables between assemblages, using generalised linear models, linear models with negative constraints, generalised additive models,shape constrained additive models, and I-splines.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("zetadiv", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-zetadiv

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-zetadiv

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-zetadiv

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25

Show 1 earlier changeHide 1 earlier change

ERROR11 OK, 2 NOTE, 1 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.0

READMENoVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 33
Examples that run: 100%26 run in a plain check
Exported functions with examples: 96%
Documented parameters: 99%
Return-value docs: 96%
Help pages citing references: 97%

How these are measured

Downloads

5.6K

CRAN downloads in the past year

Rank #6,664 · ~15/day · ~466/mo

Releases R versions

Daily download trend is not available in this view yet.

51530 days

1.3K90 days

5.6K1 year

Compare downloads with other packages →

Also on74 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing zetadiv adds 66 packages (36 with compiled code, 57 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, doBy 4.3 MB.

Depends (2)

R >= 4.5.0scam

Imports (10)

statsgraphicsgrDevicesutilscarmgcvvegan geodist nnls glm2

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

pctax

How these are counted

Code & Tests

Datasets

People & History

People (4)

Guillaume Latombe

Author, Maintainer since 0.1 (2015)

Cang Hui

Author

Melodie A. McGeoch

Author

David A. Nipperess

Author · added in 1.0

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.3.0Latest
record
2025-05-28 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2022-06-11
1.2.1
record
2022-06-11 · diff ↗
archivedRemoved from CRAN
2022-05-23
requires archived package 'Imap'
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.2.0
record
2020-07-02 · diff ↗ ·
added 3 exports
Reg.ispline, Return.ispline, Zeta.order.mc.mult
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.1.1
record
2018-05-17 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1.0
record
2018-04-11 · diff ↗

Show 6 earlier eventsHide 6 earlier events

1.0.1
record
2017-06-06 · diff ↗ ·
added 1 export
Plot.ispline
R
R 3.4.0 released · 2017-04-21
1.0
record
2016-12-09 · diff ↗ ·
removed 4 exports
Zeta.decline, Zeta.gam, Zeta.lm, Zeta.order

added 16 exports
Ispline, Plot.zeta.ddecay, Plot.zeta.ddecays, Plot.zeta.decline, Plot.zeta.scale.min.dist, Plot.zeta.scale.regular, Predict.msgdm, Zeta.decline.ex, Zeta.decline.mc, Zeta.msgdm, Zeta.order.ex, Zeta.order.mc, glm.cons, glm.fit.cons, rescale.min.dist, rescale.regular
R
R 3.3.0 released · 2016-05-03
0.1
record
2015-06-04
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-06-04
Total releases: 8 / 11 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.5.0
Bundled data: 65 KB / 6 files
Download size: 135 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("zetadiv")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for zetadiv version 1.3.0 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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