xnet

0.1.11

Two-Step Kernel Ridge Regression for Network Predictions

0packages depend

2.2Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Joris MeysFirst published 2020-01-092 releasesCRAN page ↗GitHub ↗

Fit a two-step kernel ridge regression model for predicting edges in networks, and carry out cross-validation using shortcuts for swift and accurate performance assessment (Stock et al, 2018 doi:10.1093/bib/bby095 ).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("xnet", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("CenterForStatistics-UGent/xnet")

Development version from CenterForStatistics-UGent/xnet. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-xnet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-xnet

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-xnet

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.6 min · r-devel-linux-x86_64-fedora-gcc

Code health

Yes

Tests · ratio 0.34

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

README

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

2.2K

CRAN downloads in the past year

Rank #19,983 · ~6/day · ~183/mo

Releases R versions

Daily download trend is not available in this view yet.

25430 days

59990 days

2.2K1 year

Compare downloads with other packages →

Also on86 r2u24 autocran

Repository

GitHub ↗ centerforstatistics-ugent/xnet

11Stars

2Forks

2Open issues

0Open PRs

5Releases

379 commits · 0% stars, 30d

Stars over time

2023-12-21 · 112026-07-07 · 11

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (5)

methodsutilsgraphicsstatsgrDevices

LinkingTo (0)

none

Suggests (6)

testthat knitr rmarkdown ChemmineR covr fmcsR

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 6,470 (65%)Rd 2,815 (28%)Vignettes 731 (7%)

Code characteristics

Object systems

S38S4 class11S4 generic22S4 method51

Cyclomatic complexity: 2.0 median / 50 max
Test cases: 77 / 0.34 per code line
Documented parameters: 96%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

82 29 exported

Complexity

5 avg / 50 max

Call network

82 nodes / 45 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (2)

Maintainer (1)

Joris Meys

Maintainer, Author

Authors (2)

Joris Meys

Maintainer, Author

Michiel Stock

Author

Release timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.1.11Latest
2020-02-03 · current release · diff ↗
0.1.10
2020-01-09
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-01-09
Total releases: 2 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.4.0
Bundled data: 75 KB / 2 files
Download size: 236 KB
Installed size: not tracked yet
With dependencies: not tracked yet