xadmix

1.0.0

Subsetting and Plotting Optimized for Admixture Data

0packages depend

2.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Lukas SchönmannFirst published 2022-07-081 releasesCRAN page ↗GitHub ↗

A few functions which provide a quick way of subsetting genomic admixture data and generating customizable stacked barplots.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("xadmix", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("SpaceCowboy-71/xadmix")

Development version from SpaceCowboy-71/xadmix. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-xadmix

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-xadmix

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-xadmix

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.2 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.5K

CRAN downloads in the past year

Rank #17,456 · ~7/day · ~205/mo

Releases R versions

Daily download trend is not available in this view yet.

18730 days

66990 days

2.5K1 year

Compare downloads with other packages →

Also on87 r2u31 autocran

Repository

GitHub ↗ spacecowboy-71/xadmix

1Stars

0Forks

0Open issues

0Open PRs

1Releases

50Commits

3Contributors

admixturegenomicsggplot2plottingr

License GPL-3.0 · 50 commits · Last activity 2022-07-10

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/spacecowboy-71/xadmix on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (9)

dplyr forcats ggplot2 magrittrmethodsrlang stringr tidyr viridis

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 300 (42%)Rd 214 (30%)Vignettes 192 (27%)

Code characteristics

Cyclomatic complexity: 14.5 median / 16 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

2 2 exported

Complexity

14.5 avg / 16 max

Call network

2 nodes / 0 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
xadmixture	data.frame	600 × 8	–

People & History

People (1)

Maintainer (1)

Lukas Schönmann

Author, Maintainer

Authors (1)

Lukas Schönmann

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2022-07-08
Total releases: 1 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 26 KB / 1 file
Download size: 177 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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