R Observatory: Metrics for wompwomp version 0.99.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

wompwomp

0.99.0Package record

Optimizing Alluvial Plots

0packages depend

1.2Kdownloads / year

64.8%test coverage

13/13flavors OK

Overview

About

Maintained by Joseph RichCRAN page ↗GitHub ↗Issues ↗

Sort k-partite graphs with node order, layer order, and node grouping optimized with a heuristic to (nearly) minimize edge crossings. Useful for improving visualizations with alluvial plots by "untangling" the graphs.

Install

BioconductorR (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

BiocManager::install("wompwomp")

Installs the current Bioconductor release. Requires the BiocManager package.

install.packages("wompwomp", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("pachterlab/wompwomp")

Development version from pachterlab/wompwomp. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wompwomp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-wompwomp

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-wompwomp

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK7 OK2026-06-30

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.99.0

READMEYes · 252 wordsVignettesYes · 2 · dynamicNEWSYes · 33% structured · does not mention 0.99.0Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 9 (1 internal)includes a package overview page
Examples that run: 88%7 run in a plain check · 1 never run
Exported functions with examples: 100%
Documented parameters: 90%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

How these are measured

Downloads

1.2K

CRAN downloads in the past year

Rank #11,763 · ~3/day · ~97/mo

Releases R versions

Daily download trend is not available in this view yet.

26330 days

93090 days

1.2K1 year

Compare downloads with other packages →

Also on22 r2u10 autocran

How downloads are counted

Repository

pachterlab/wompwomp ↗Organization: pachterlab

33Stars

1Forks

1Open issues

0Open PRs

1Releases

355Commits

4Commit identities

355 commits · Last activity 2026-09-21 · 0% stars, 30d · Default branch at 1.0.0, ahead of CRAN 0.99.0 (checked 2026-10-21)

Responsiveness

How these are sampled

PRs merged (all time): 75%
Median days to close, 50 most recently updated closed issues: 0
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-10-13 · 222026-09-22 · 33

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/pachterlab/wompwomp on 2026-10-21.

Reproducibility and dev environment (1)

Dockerfile

Lint, format, editor (1)

lintr

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

23 external dependencies (excludes base and recommended)

Installing wompwomp adds 24 packages (14 with compiled code, 24 MB of source tarballs). Heaviest: stringi 11 MB, igraph 4.8 MB, vctrs 1.0 MB.

Depends (1)

R >= 4.1.0

Imports (12)

dplyr igraph tibble rlang tidyr purrr TSP R6statstidyselect vctrsutils

LinkingTo (0)

none

Suggests (13)

testthat vdiffr magick knitr rmarkdown gtools mclust here stringr reticulate ggplot2 ggalluvial sessioninfo

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Joseph Rich

Author, Maintainer since 0.99.0 (2026)

Conrad Oakes

Author

Lior Pachter

Author

Releases (1)

0.99.0Latest
record
2026-06-29 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-29
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Download size: 118 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("wompwomp")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.48550/arxiv.2509.03761.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for wompwomp version 0.99.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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