wnpmle

0.1.2

Weighted NPMLE for Recurrent Events with a Competing Terminal Event

0packages depend

341downloads / year

50.5%test coverage

13/13checks pass

Overview

About

Maintained by Anna BellachFirst published 2026-06-181 releasesCRAN page ↗GitHub ↗

Provides regression modeling and prediction for the marginal mean of recurrent events in the presence of a competing terminal event using the weighted nonparametric maximum likelihood estimator (wNPMLE) of Bellach and Kosorok (2026) doi:10.48550/arXiv.2605.25934. Two classes of transformation models are implemented: Box-Cox transformation models and logarithmic transformation models. These extend the proportional means model of Ghosh and Lin (2002) doi:10.17615/pt0g-y207 and the transformation model framework of Zeng and Lin (2006) doi:10.1093/biomet/93.3.627. Parameter estimation is performed using automatic differentiation through the Template Model Builder (TMB) framework. Standard errors are computed using sandwich variance estimators that account for estimation of the inverse-probability censoring weights following Bellach, Kosorok, Rüschendorf and Fine (2019) doi:10.1080/01621459.2017.1401540.

Install

R (CRAN)pak (dev)Fedora (COPR)openSUSE (OBS)

install.packages("wnpmle", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("abellach/wnpmle")

Development version from abellach/wnpmle. Installs pak first if it is not already available.

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-wnpmle

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-wnpmle

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 8.6 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.06

50.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-19
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 413 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 25%
Documented parameters: 98%
Return-value docs: 100%
References docs: 21%

Downloads

341

CRAN downloads in the past year

Rank #24,051 · ~1/day · ~28/mo

Releases R versions

Daily download trend is not available in this view yet.

27130 days

34190 days

3411 year

Compare downloads with other packages →

Also on3 autocran

Repository

GitHub ↗ abellach/wnpmle

0Stars

0Forks

0Open issues

0Open PRs

1Releases

69Commits

1Contributors

69 commits · Last activity 2026-06-20

Releases over time

2026-06-20 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/abellach/wnpmle on 2026-07-19.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (6)

TMBsurvivalmethodsMASSgraphicsgrDevices

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Anna Bellach

Author, Maintainer

Authors (1)

Anna Bellach

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

0.1.2Latest
2026-06-18 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-18
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.1.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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