R Observatory: Metrics for wingen version 2.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

wingen

2.2.0Package record

Continuous Mapping of Genetic Diversity

0packages depend

6.6Kdownloads / year

83.6%test coverage

13/13flavors OK

Overview

About

Maintained by Anusha BishopCRAN page ↗GitHub ↗Issues ↗

Generate continuous maps of genetic diversity using moving windows with options for rarefaction, interpolation, and masking as described in Bishop et al. (2023) doi:10.1111/2041-210X.14090.

Changes in 2.2.0

New kriging function

New wkrig_gd() for improved kriging performance.
Superseded krig_gd(): This legacy function now gives a deprecation warning and requires manual installation of the automap package.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("wingen", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("AnushaPB/wingen")

Development version from AnushaPB/wingen. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wingen

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-wingen

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 16.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-04-30
ERROR12 OK, 1 ERROR2026-04-28
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.2.0

READMEYes · 329 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 2.2.0Citation fileYes · cites a publication

Help pages: 29 (1 internal)includes a package overview page
Examples that run: 88%14 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 1 never run
Exported functions with examples: 80%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

wingen-vignette HTML

How these are measured

Downloads

6.6K

CRAN downloads in the past year

Rank #7,844 · ~18/day · ~550/mo

Releases R versions

Daily download trend is not available in this view yet.

39030 days

1.1K90 days

6.6K1 year

Compare downloads with other packages →

Also on81 r2u

How downloads are counted

Repository

anushapb/wingen ↗Account: AnushaPB

17Stars

0Forks

0Open issues

0Open PRs

8Releases

1,571Commits

4Commit identities

1,571 commits · Last activity 2025-08-19 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 91%
Median days to close, 50 most recently updated closed issues: 10
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-08-24 · 142026-08-30 · 17

How these are measured

PracticesBeta

9 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/anushapb/wingen on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux and Windows

Docs source (2)

README.Rmd

GitHub Pages site

Coverage (1)

Coverage reporting (Codecov)

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 2 practices

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository has an AI review tool set up.

Review tools

Copilot code review
Commits: some accepting its review suggestions, count not recorded

How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

29 external dependencies (excludes base and recommended)

Installing wingen adds 102 packages (62 with compiled code, 117 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, ggplot2 6.0 MB.

Depends (1)

R >= 4.1.0

Imports (22)

crayon dplyr furrr gdistance ggplot2graphicsgrDevicesgstat hierfstat lifecycle magrittr pegas purrr raster rlang sf terra tidyr tidyselectutilsvcfR viridis

LinkingTo (0)

none

Suggests (11)

adegenet automap covr devtools future knitrMASSrmarkdown stringr SpatialKDE testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Anusha Bishop

Author, Maintainer since 2.1.1 (2024)

Anne Chambers

Author

Ian Wang

Author

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2025-08-19
2.2.0Latest
record
2025-08-19 · current release · diff ↗ ·
added 1 export
wkrig_gd
archivedRemoved from CRAN
2025-06-30
requires archived package 'automap'
R
R 4.5.0 released · 2025-04-11
2.1.2
record
2024-05-17 · diff ↗
R
R 4.4.0 released · 2024-04-24
2.1.1
record
2024-02-27
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-02-27
Total releases: 3 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 60 KB / 8 files
Download size: 3.9 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("wingen")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1111/2041-210x.14090.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for wingen version 2.2.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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