R Observatory: Metrics for wgaim version 2.0-6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

wgaim

2.0-6

Whole Genome Average Interval Mapping for QTL Detection and Estimation using ASReml-R

0packages depend

2.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Julian TaylorFirst published 2008-06-2425 releasesCRAN page ↗GitHub ↗

A computationally efficient whole genome approach to detecting and estimating significant QTL in linkage maps using the flexible linear mixed modelling functionality of ASReml-R.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("wgaim", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("DrJ001/wgaim")

Development version from DrJ001/wgaim. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wgaim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-wgaim

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-wgaim

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.3 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 266 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 47%
Documented parameters: 43%
Return-value docs: 90%
References docs: 59%

Downloads

2.6K

CRAN downloads in the past year

Rank #15,098 · ~7/day · ~217/mo

Releases R versions

Daily download trend is not available in this view yet.

15830 days

68790 days

2.6K1 year

Compare downloads with other packages →

Also on87 r2u17 autocran

Repository

GitHub ↗ drj001/wgaim

0Stars

0Forks

1Open issues

0Open PRs

0Releases

Last activity 2026-08-05

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/drj001/wgaim on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5.0qtl

Imports (1)

ggplot2

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown prettydoc

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Julian Taylor

Author, Maintainer

Authors (2)

Julian Taylor

Author, Maintainer

Ari Verbyla

Author

Listed in earlier versions (2)

Brian Cullis.

no longer listed · 0.1-0 to 1.4-11

Simon Diffey

no longer listed · 0.1-0 to 1.4-11

Package Timeline

25 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.0-6Latest
2024-08-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
2.0-1
2019-10-03 · diff ↗
2.0-0
2019-08-28 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.4-11
2016-06-30 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.4-10
2015-06-26 · diff ↗

Show 32 earlier events

1.4-8
2015-05-06 · diff ↗
1.4-7
2015-05-04 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.4-6
2015-02-03 · diff ↗
1.4-5
2015-01-31 · diff ↗
1.4-3
2014-09-03 · diff ↗
R
R 3.1.0 released · 2014-04-10
1.4-0
2013-05-07 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.3-0
2012-09-11 · diff ↗
R
R 2.15.0 released · 2012-03-30
1.2
2011-11-27 · diff ↗
R
R 2.14.0 released · 2011-10-31
1.1
2011-10-25 · diff ↗
R
R 2.13.0 released · 2011-04-13
0.99-4.3
2011-04-05 · diff ↗
0.99-4.2
2011-04-04 · diff ↗
0.99-4
2011-02-07 · diff ↗
R
R 2.12.0 released · 2010-10-15
0.99-2
2010-08-02 · diff ↗
0.99-1
2010-06-09 · diff ↗
R
R 2.11.0 released · 2010-04-22
R
R 2.10.0 released · 2009-10-26
0.3
2009-06-26 · diff ↗
0.2-2
2009-05-24 · diff ↗
R
R 2.9.0 released · 2009-04-17
0.2
2008-11-27 · diff ↗
R
R 2.8.0 released · 2008-10-20
0.1-2
2008-07-15 · diff ↗
0.1-1
2008-07-05 · diff ↗
0.1-0
2008-06-24
R
R 2.7.0 released · 2008-04-22

Package metadata

First published: 2008-06-24
Total releases: 25 / 18 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 124 KB / 6 files
Download size: 666 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("wgaim")

Format

Taylor, J., & Verbyla, A. (2024). wgaim: Whole Genome Average Interval Mapping for QTL Detection and Estimation using ASReml-R (Version 2.0-6) [Computer software]. https://doi.org/10.32614/CRAN.package.wgaim

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for wgaim version 2.0-6 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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