R Observatory: Metrics for vandalico version 0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

vandalico

0.2.2Package record

Evaluation of Presence-Absence Models

0packages depend

4.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Alberto Jiménez-ValverdeCRAN page ↗

Collection of functions to evaluate presence-absence models. It comprises functions to adjust discrimination statistics for the representativeness effect through case-weighting, along with functions for visualizing the outcomes. Originally outlined in: Jiménez-Valverde (2022) The uniform AUC: dealing with the representativeness effect in presence-absence models. Methods Ecol. Evol, 13, 1224-1236.

Changes in 0.2.2

Fixed

Fix bug in function AUCuniform.2 when ties occur at maximum value of the classification rule.

Documentation

Minor improvements and typo fixes.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("vandalico", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-vandalico

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-vandalico

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-vandalico

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 48 s · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.2

READMENoVignettesNoNEWSYes · 100% structured · mentions 0.2.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5 (1 internal)
Examples that run: 80%4 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 100%

How these are measured

Downloads

4.9K

CRAN downloads in the past year

Rank #11,502 · ~14/day · ~411/mo

Releases R versions

Daily download trend is not available in this view yet.

31130 days

94290 days

4.9K1 year

Compare downloads with other packages →

Also on103 r2u5 autocran

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing vandalico adds 5 packages (3 with compiled code, 5.2 MB of source tarballs). Heaviest: gplots 4.6 MB, ROCR 268 KB, gtools 236 KB.

Depends (1)

R >= 4.3.0

Imports (3)

ROCRstatsgraphics

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Alberto Jiménez-Valverde

Author, Maintainer since 0.0.1 (2022)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.2.2Latest
record
2026-04-14 · current release · diff ↗
0.2.1
record
2026-01-08 · diff ↗
0.2.0
record
2025-10-29 · diff ↗ ·
added 1 export
AUCuniform.2
R
R 4.5.0 released · 2025-04-11
0.1.0
record
2024-09-06 · diff ↗ ·
added 2 exports
AUCuniform_trap, HSgraph
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.0.1
record
2022-02-15
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-15
Total releases: 5 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.3.0
Download size: 13 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("vandalico")

Format

Jiménez-Valverde, A. (2026). vandalico: Evaluation of Presence-Absence Models (Version 0.2.2) [Computer software]. https://doi.org/10.32614/CRAN.package.vandalico

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for vandalico version 0.2.2 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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