R Observatory: Metrics for valorate version 1.0-5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

valorate

1.0-5Package record

Velocity and Accuracy of the LOg-RAnk TEst

0packages depend

2.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Victor TrevinoCRAN page ↗Website ↗

The algorithm implemented in this package was designed to quickly estimates the distribution of the log-rank especially for heavy unbalanced groups. VALORATE estimates the null distribution and the p-value of the log-rank test based on a recent formulation. For a given number of alterations that define the size of survival groups, the estimation involves a weighted sum of distributions that are conditional on a co-occurrence term where mutations and events are both present. The estimation of conditional distributions is quite fast allowing the analysis of large datasets in few minutes https://bioinformatics.mx/index.php/bioinfo-tools/.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("valorate", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-valorate

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-valorate

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-valorate

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.9 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0-5

READMENoVignettesNoNEWSNoCitation fileNoWebsiteYes

Help pages: 11 (1 internal)
Examples that run: 100%10 run in a plain check
Exported functions with examples: 91%
Documented parameters: 96%
Return-value docs: 91%
Help pages citing references: 91%

How these are measured

Downloads

2.1K

CRAN downloads in the past year

Rank #22,327 · ~6/day · ~173/mo

Releases R versions

Daily download trend is not available in this view yet.

21230 days

60090 days

2.1K1 year

Compare downloads with other packages →

Also on340 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing valorate adds no packages beyond those that come with R.

Depends (2)

R >= 3.1.0methods

Imports (4)

survivalgraphicsutilsstats

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Victor Trevino

Author, Maintainer since 1.0-0 (2016)

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.0-5Latest
record
2025-03-27 · current release · diff ↗ ·
added 1 export
valorate.random.n1
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.0-1
record
2016-10-09 · diff ↗
1.0-0
record
2016-10-02
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-10-02
Total releases: 3 / 10 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.1.0
Download size: 27 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("valorate")

Format

Trevino, V. (2025). valorate: Velocity and Accuracy of the LOg-RAnk TEst (Version 1.0-5) [Computer software]. https://doi.org/10.32614/CRAN.package.valorate

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for valorate version 1.0-5 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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