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tsiR

An Implementation of the TSIR Model

v0.4.3 · Jan 20, 2021 · GPL-3

Description

An implementation of the time-series Susceptible-Infected-Recovered (TSIR) model using a number of different fitting options for infectious disease time series data. The manuscript based on this package can be found here <doi:10.1371/journal.pone.0185528>. The method implemented here is described by Finkenstadt and Grenfell (2000) <doi:10.1111/1467-9876.00187>.

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies ggplot2 kernlab reshape2 tsiR

Version History

new 0.4.3 Mar 10, 2026
updated 0.4.3 ← 0.4.2 diff Jan 19, 2021
updated 0.4.2 ← 0.4.1 diff Jul 8, 2019
updated 0.4.1 ← 0.4.0 diff Jan 29, 2019
updated 0.4.0 ← 0.3.0 diff Dec 19, 2018
updated 0.3.0 ← 0.2.0 diff Aug 13, 2017
updated 0.2.0 ← 0.1.0 diff May 23, 2017
new 0.1.0 Feb 16, 2017