R Observatory: Metrics for tramME version 1.0.8

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tramME

1.0.8

Transformation Models with Mixed Effects

1packages depend

27.6Kdownloads / year

54.6%test coverage

11/13checks pass

Overview

About

Maintained by Balint TamasiFirst published 2020-03-2117 releasesCRAN page ↗

Likelihood-based estimation of mixed-effects transformation models using the Template Model Builder ('TMB', Kristensen et al., 2016) doi:10.18637/jss.v070.i05. The technical details of transformation models are given in Hothorn et al. (2018) doi:10.1111/sjos.12291. Likelihood contributions of exact, randomly censored (left, right, interval) and truncated observations are supported. The random effects are assumed to be normally distributed on the scale of the transformation function, the marginal likelihood is evaluated using the Laplace approximation, and the gradients are calculated with automatic differentiation (Tamasi & Hothorn, 2021) doi:10.32614/RJ-2021-075. Penalized smooth shift terms can be defined using the 'mgcv' notation. Additive mixed-effects transformation models are described in Tamasi (2025) doi:10.18637/jss.v114.i11.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tramME", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tramme

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tramME

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tramME

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 10.3 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.19

54.6%

Coverage · measured lines

100%

Documentation · exports

16

Dependencies · direct

Check history

NOTE2026-03-10
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 98%
Return-value docs: 88%
References docs: 22%

Downloads

27.6K

CRAN downloads in the past year

Rank #3,599 · ~75/day · ~2.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

65130 days

2.7K90 days

27.6K1 year

Compare downloads with other packages →

Also on467 r2u2 autocran

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.6.0tram mlt

Imports (14)

alabamaMatrixmethodsmgcvnlmeTMB (>= 1.7.15)statsvariables basefun numDerivMASSconeproj mvtnorm reformulas

LinkingTo (2)

TMB RcppEigen

Suggests (12)

lme4 multcompparallelsurvivalknitr coxme ordinal ordinalCont gamm4 gamlss.dist glmmTMB xtable

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

tram

Code & Tests

People & History

People (2)

Maintainer (1)

Balint Tamasi

Author, Maintainer

Authors (1)

Balint Tamasi

Author, Maintainer

Contributors (1)

Torsten Hothorn

Contributor

Package Timeline

17 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.8Latest
2025-09-08 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.7
2024-11-29 · diff ↗
1.0.6
2024-07-02 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.5
2023-06-29 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.4
2023-04-04 · diff ↗
1.0.3
2022-09-05 · diff ↗
1.0.2
2022-07-05 · diff ↗
1.0.1
2022-04-25 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.0
2022-04-12 · diff ↗
0.1.3
2022-03-08 · diff ↗
0.1.2
2021-08-16 · diff ↗

Show 9 earlier events

R
R 4.1.0 released · 2021-05-18
0.1.1
2021-04-13 · diff ↗
0.1.0
2021-03-30 · diff ↗
0.0.4
2021-02-04 · diff ↗
0.0.3
2020-07-31 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.0.2
2020-04-07 · diff ↗
0.0.1
2020-03-21
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-03-21
Total releases: 17 / 6 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.6.0
Download size: 4.8 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Mixed, Multilevel, and Hierarchical Models in R

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("tramME")

Format

Tamasi, B., & Hothorn, T. (2025). tramME: Transformation Models with Mixed Effects (Version 1.0.8) [Computer software]. https://doi.org/10.32614/CRAN.package.tramME

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tramME version 1.0.8 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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