R Observatory: Metrics for toxdrc version 2.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

toxdrc

2.0.0

Pipeline for Dose-Response Curve Analysis

0packages depend

3Kdownloads / year

89.3%test coverage

13/13checks pass

Overview

About

Maintained by Jack SaloleFirst published 2026-01-142 releasesCRAN page ↗GitHub ↗

Provides a variety of tools for assessing dose response curves, with an emphasis on toxicity test data. The main feature of this package are modular functions which can be combined through the namesake pipeline, 'runtoxdrc', to automate the analysis for large and complex datasets. This includes optional data preprocessing steps, like outlier detection, solvent effects, blank correction, averaging technical replicates, and much more. Additionally, this pipeline is adaptable to any long form dataset, and does not require specific column or group naming to work.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("toxdrc", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jsalole/toxdrc")

Development version from jsalole/toxdrc. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-toxdrc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-toxdrc

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-toxdrc

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 11.9 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.92

89.3%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 696 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 89%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3K

CRAN downloads in the past year

Rank #9,845 · ~8/day · ~253/mo

Releases R versions

Daily download trend is not available in this view yet.

19030 days

96690 days

3K1 year

Compare downloads with other packages →

Also on45 r2u

Repository

GitHub ↗ jsalole/toxdrc

3Stars

0Forks

0Open issues

0Open PRs

4Releases

119Commits

1Contributors

119 commits · Last activity 2026-07-29 · 0% stars, 30d

Stars over time

2025-10-06 · 12026-07-07 · 3

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/jsalole/toxdrc on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (7)

dplyr magrittr outliers purrr rlangstatsdrc

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Jack Salole

Author, Maintainer

Authors (1)

Jack Salole

Author, Maintainer

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

2.0.0Latest
2026-07-29 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.1
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-01-14
Total releases: 2 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1
Bundled data: 4.8 KB / 3 files
Download size: 86 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("toxdrc")

Format

Salole, J. (2026). toxdrc: Pipeline for Dose-Response Curve Analysis (Version 2.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.toxdrc

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for toxdrc version 2.0.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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