R Observatory: Metrics for tip version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tip

0.1.0Package record

Bayesian Clustering Using the Table Invitation Prior (TIP)

0packages depend

2.2Kdownloads / year

–test coverage

0/13flavors OK

Overview

About

Maintained by Charles W. HarrisonCRAN page ↗

Cluster data without specifying the number of clusters using the Table Invitation Prior (TIP) introduced in the paper "Clustering Gene Expression Using the Table Invitation Prior" by Charles W. Harrison, Qing He, and Hsin-Hsiung Huang (2022) doi:10.3390/genes13112036. TIP is a Bayesian prior that uses pairwise distance and similarity information to cluster vectors, matrices, or tensors.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tip", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tip

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tip

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tip

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) partition_undirected_graph.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{cutoff}{Numeric. The value max(0, g_{i,j} - cutoff) so that there are <\code{.num_components}> components in the graph.}
       |                                           ^

CRAN check page ↗

Slowest check: 3.5 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTE2026-09-09
ERROR12 NOTE, 1 ERROR2026-09-04
NOTE13 NOTE2026-06-09
ERROR12 NOTE, 1 ERROR2026-06-08
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMEYes · 619 wordsVignettesYes · 5 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9
Examples that run: 63%5 run in a plain check · 3 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (5)

iris-NIW-vignette HTML
matrix-clustering-CONSTANT-vignette HTML
matrix-clustering-MNIW-vignette HTML
tensor-clustering-CONSTANT-vignette HTML
usarrests-NIW-vignette HTML

How these are measured

Downloads

2.2K

CRAN downloads in the past year

Rank #19,423 · ~6/day · ~182/mo

Releases R versions

Daily download trend is not available in this view yet.

26230 days

65890 days

2.2K1 year

Compare downloads with other packages →

Also on74 r2u7 autocran

How downloads are counted

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing tip adds 50 packages (23 with compiled code, 47 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, igraph 4.8 MB.

Depends (0)

none

Imports (12)

rlang igraph network ggplot2 GGally LaplacesDemon changepointparalleldoParallel foreachmethodsmniw

LinkingTo (0)

none

Suggests (7)

knitr sna mcclust SMFilter rmarkdown spelling testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Charles W. Harrison

Qing He

Author, Copyright holder

Hsin-Hsiung Huang

Author, Copyright holder

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.0Latest
record
2022-11-14 · current release
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-11-14
Total releases: 1 / 4 yrs
License: MIT + file LICENSE OSI
Download size: 246 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("tip")

Format

Harrison, C. W., He, Q., & Huang, H. (2022). tip: Bayesian Clustering Using the Table Invitation Prior (TIP) (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.tip

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tip version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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