This package was removed from CRAN on 2023-03-29. Its history is shown below.

Reason: requires removed package 'opentimsr'

Details below reflect version 0.0.3, its last release before removal.

timsr

0.0.3

Easily Access timsTOF Data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Mateusz Krzysztof Łącki2 releasesCRAN page ↗

Access 'timsTOF' mass spectrometry data, as described https://sso.bruker.com/auth/realms/bruker/protocol/openid-connect/auth?client_id=aem-bruker.com&redirect_uri=https%3A%2F%2Fwww.bruker.com%2Fen.login.html%3FtargetUrl%3Dhttps%3A%2F%2Fwww.bruker.com%2Fen%2Fservices%2Fsoftware-downloads%2Fmass-spectrometry.html&response_type=id_token%20token&scope=openid%20profile&state=4f9d225e92f341cca3b03a55533dbd65&nonce=f550633b1e984ecfb07979ae6d9277b4&ui_locales=en (after registering), using the 'OpenTIMS' C++ reader and save all into 'data.tables'.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/timsr/timsr_0.0.3.tar.gz"
pkgFile <- "timsr_0.0.3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.0.3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-timsr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-timsr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Documentation

Documentation signals are not tracked yet for this package.

Downloads

timsr Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on60 r2u16 autocran

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.0

Imports (3)

opentimsr data.tablemethods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Mateusz Krzysztof Łącki

Author, Maintainer, Copyright holder

Authors (2)

Mateusz Krzysztof Łącki

Author, Maintainer, Copyright holder

Michał Piotr Startek

Author, Copyright holder

Mateusz Krzysztof Łącki

Author, Maintainer, Copyright holder

Michał Piotr Startek

Author, Copyright holder

Package Timeline

2 releases. R releases are shown for context.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2023-03-29
requires removed package 'opentimsr'
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.0.3
2021-05-11 · diff ↗
0.0.2
2021-05-04
R
R 4.0.0 released · 2020-04-24

Package metadata

Total releases: 2
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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