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tigger

Infers Novel Immunoglobulin Alleles from Sequencing Data

v1.1.2 · Jan 9, 2026 · AGPL-3
CRAN GitHub Mirror

Description

Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.

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CRAN Check Status

1 ERROR
13 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (1 non-OK)
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Tigger-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `7c69f819751f61ac689dde7f6d6cc262e77b3743.pdf'
 not found: using draft setting.

Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/tigger.Rcheck/vign_test/tigger/vignettes/Tigger-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Tigger-Vignette.log for more info.
--- failed re-building 'Tigger-Vignette.Rmd'

SUMMARY: processing the following file failed:
  'Tigger-Vignette.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Tigger-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `7c69f819751f61ac689dde7f6d6cc262e77b3743.pdf'
 not found: using draft setting.

Error: processing vignette 'Tigger-Vignette.Rmd
...[truncated]...
tinytex/r/#debugging for debugging tips. See Tigger-Vignette.log for more info.
--- failed re-building 'Tigger-Vignette.Rmd'

SUMMARY: processing the following file failed:
  'Tigger-Vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (2)

imports

ogrdbstats piglet

Dependency Network

Dependencies Reverse dependencies ggplot2 alakazam dplyr doParallel foreach gridExtra gtools iterators lazyeval rlang stringi tidyr ogrdbstats piglet tigger

Version History

new 1.1.2 Mar 10, 2026
updated 1.1.2 ← 1.1.0 diff Jan 9, 2026
updated 1.1.0 ← 1.0.1 diff Oct 9, 2023
updated 1.0.1 ← 1.0.0 diff Sep 19, 2022
updated 1.0.0 ← 0.4.0 diff May 12, 2020
updated 0.4.0 ← 0.3.1 diff Jul 18, 2019
updated 0.3.1 ← 0.3.0 diff Oct 18, 2018
updated 0.3.0 ← 0.2.11 diff Oct 2, 2018
updated 0.2.11 ← 0.2.10 diff Sep 20, 2017
updated 0.2.10 ← 0.2.9.999 diff Jul 2, 2017
updated 0.2.9.999 ← 0.2.8 diff May 15, 2017
updated 0.2.8 ← 0.2.7 diff Aug 27, 2016
updated 0.2.7 ← 0.2.5 diff Jul 24, 2016
new 0.2.5 Jun 7, 2016