R Observatory: Metrics for tdthap version 1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tdthap

1.4

TDT Tests for Extended Haplotypes

0packages depend

3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Jing Hua ZhaoFirst published 2007-11-2211 releasesCRAN page ↗GitHub ↗

Functions and examples for transmission/disequilibrium tests for extended marker haplotypes, as described in Clayton and Jones (1999) doi:10.1086/302566.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tdthap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jinghuazhao/R")

Development version from jinghuazhao/R. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tdthap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tdthap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tdthap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.3 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

0

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-01
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 97%
Return-value docs: 83%
References docs: 83%

Downloads

3K

CRAN downloads in the past year

Rank #12,082 · ~8/day · ~248/mo

Releases R versions

Daily download trend is not available in this view yet.

15030 days

83590 days

3K1 year

Compare downloads with other packages →

Also on403 r2u15 autocran64 c2d4u

Repository

GitHub ↗ jinghuazhao/r

13Stars

4Forks

5Open issues

0Open PRs

0Releases

3,000Commits

4Contributors

geneticslmmimputation

3,000 commits · Last activity 2026-08-06 · 0% stars, 30d

Stars over time

2024-03-15 · 122026-07-07 · 13

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/jinghuazhao/r on 2026-08-09.

Continuous integration (1)

GitHub Actions

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

utils

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Jing Hua Zhao

Maintainer

Authors (1)

David Clayton

Author

Listed in earlier versions (1)

Zhao

no longer listed · 1.4

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

1.4Latest
2026-06-25 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.3
2023-11-29 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.2
2022-10-29 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.1-11
2019-08-22 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.1-9
2018-06-30 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03

Show 19 earlier events

R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.1-7
2013-12-10 · diff ↗
1.1-6
2013-04-08 · diff ↗
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
1.1-5
2012-03-22 · diff ↗
1.1-4
2012-03-19 · diff ↗
1.1-3
2012-03-06 · diff ↗
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
R
R 2.10.0 released · 2009-10-26
R
R 2.9.0 released · 2009-04-17
R
R 2.8.0 released · 2008-10-20
R
R 2.7.0 released · 2008-04-22
1.1-2
2007-11-22
R
R 2.6.0 released · 2007-10-03

Package metadata

First published: 2007-11-22
Total releases: 11 / 19 yrs
License: Artistic-2.0 OSI
Minimum R: ≥ 3.5.0
Download size: 534 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("tdthap")

Format

Zhao, J. H., & Clayton, D. (2026). tdthap: TDT Tests for Extended Haplotypes (Version 1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.tdthap

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tdthap version 1.4 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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