R Observatory: Metrics for sybilSBML version 3.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-01-12. Its history is shown below.

Reason: installation problems were not corrected in time. including with current libSBML 5.18.0 and with static libs, and warns with 5.17.0

Details below reflect version 3.1.2, its last release before removal.

sybilSBML

3.1.2Package record

'SBML' Integration in Package 'Sybil'

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Mayo RoettgerCRAN page ↗

'SBML' (Systems Biology Markup Language) with 'FBC' (Flux Balance Constraints) integration in 'sybil'. Many constraint based metabolic models are published in 'SBML' format ('*.xml'). Herewith is the ability to read, write, and check 'SBML' files in 'sybil' provided.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/sybilSBML/sybilSBML_3.1.2.tar.gz"
pkgFile <- "sybilSBML_3.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (3.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 3.1.2

READMEYes · 10 wordsVignettesYes · 1 · dynamicNEWSYes · does not mention 3.1.2Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 27
Examples that run: 100%5 run in a plain check
Exported functions with examples: 19%
Documented parameters: 100%
Return-value docs: 93%
Help pages citing references: 85%

How these are measured

Downloads

sybilSBML Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (3)

R >= 2.14.2Matrixsybil

Imports (1)

methods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (5)

Mayo Roettger

Maintainer since 3.1.2 (2020) · added in 3.1.2

Gabriel Gelius-Dietrich

Author

C. Jonathan

Contributor · added in 2.0.10

Deya Alzoubi

Contributor · added in 2.0.2

Ardalan Habil

Contributor · added in 3.0.1

Previously maintained by C. Jonathan Fritzemeier (2.0.10 to 3.0.1) and Gabriel Gelius-Dietrich (1.1.14 to 2.0.8).

Releases (14)

Pick two releases to compare their code metrics.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-01-12
installation problems were not corrected in time including with current libSBML 5.18.0 and with static libs, and warns with 5.17.0
R
R 4.0.0 released · 2020-04-24
unarchivedReturned to CRAN
2020-03-28
3.1.2
record
2020-03-28 · diff ↗ ·
added 2 exports
isAvailableFbcPlugin, isAvailableGroupsPlugin
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
archivedRemoved from CRAN
2018-03-05
check problems were not corrected despite reminders
R
R 3.4.0 released · 2017-04-21
3.0.1
record
2017-01-12 · diff ↗ ·
added 4 exports
writeSBML, getSBMLFbcversion, getSBMLmodNotes, getSBMLmodAnnotation
2.0.11
record
2016-06-06 · diff ↗
R
R 3.3.0 released · 2016-05-03
2.0.10
record
2015-07-03 · diff ↗
R
R 3.2.0 released · 2015-04-16
2.0.8
record
2014-05-21 · diff ↗
R
R 3.1.0 released · 2014-04-10

Show 11 earlier eventsHide 11 earlier events

2.0.7
record
2013-11-27 · diff ↗
2.0.6
record
2013-10-26 · diff ↗
2.0.5
record
2013-09-08 · diff ↗
2.0.4
record
2013-08-01 · diff ↗
2.0.3
record
2013-05-30 · diff ↗
2.0.2
record
2013-05-28 · diff ↗ ·
added 34 exports
sbmlPtrType, sbmlPointer, sbmlDocKey, sbmlFileName, isNULLpointerSBML, isSBMLdocpointer, isSBMLmodpointer, sbmlInfos, sbmlWarnings, sbmlErrors, sbmlFatals, getNumErrors, printSlot, sbmlDocPointer, sbmlModPointer, sbmlError, versionLibSBML, openSBMLfile, closeSBMLfile, getSBMLmodel, delSBMLmodel, getSBMLlevel, getSBMLversion, validateSBMLdocument, getSBMLerrors, getSBMLmodId, getSBMLmodName, getSBMLnumCompart, getSBMLnumSpecies, getSBMLnumReactions and 4 more
R
R 3.0.0 released · 2013-04-03
1.1.16
record
2013-01-16 · diff ↗
1.1.15
record
2012-10-15 · diff ↗
1.1.14
record
2012-04-20
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-04-20
Total releases: 14 / 14 yrs
License: GPL-3 | file LICENSE OSI
Minimum R: ≥ 2.14.2

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("sybilSBML")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sybilSBML version 3.1.2 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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