swaRmverse

0.1.1

Swarm Space Creation

0packages depend

2.1Kdownloads / year

12.9%test coverage

13/13checks pass

Overview

About

Maintained by Marina PapadopoulouFirst published 2024-03-262 releasesCRAN page ↗GitHub ↗

Provides a pipeline for the comparative analysis of collective movement data (e.g. fish schools, bird flocks, baboon troops) by processing 2-dimensional positional data (x,y,t) from GPS trackers or computer vision tracking systems, discretizing events of collective motion, calculating a set of established metrics that characterize each event, and placing the events in a multi-dimensional swarm space constructed from these metrics. The swarm space concept, the metrics and data sets included are described in: Papadopoulou Marina, Furtbauer Ines, O'Bryan Lisa R., Garnier Simon, Georgopoulou Dimitra G., Bracken Anna M., Christensen Charlotte and King Andrew J. (2023) doi:10.1098/rstb.2022.0068.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("swaRmverse", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("marinapapa/swaRmverse")

Development version from marinapapa/swaRmverse. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-swarmverse

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-swaRmverse

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-swaRmverse

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.4 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.04

12.9%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 191 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 96%
Documented parameters: 100%
Return-value docs: 100%
References docs: 9%

Downloads

2.1K

CRAN downloads in the past year

Rank #21,432 · ~6/day · ~174/mo

Releases R versions

Daily download trend is not available in this view yet.

18130 days

56490 days

2.1K1 year

Compare downloads with other packages →

Also on96 r2u36 autocran

Repository

GitHub ↗ marinapapa/swarmverse

2Stars

0Forks

0Open issues

0Open PRs

2Releases

75Commits

2Contributors

License GPL-3.0 · 75 commits · Last activity 2024-11-21

Stars over time

2025-02-19 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/marinapapa/swarmverse on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (6)

parallelpbapply Rtsne trackdf swaRm geosphere

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown ggplot2 testthat covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 2,496 (53%)Rd 1,803 (39%)Vignettes 371 (8%)

Code characteristics

Cyclomatic complexity: 3.0 median / 11 max
Test cases: 7 / 0.04 per code line

Test coverage

Line coverage

13%

Expression

17.1%

Tests / Examples

12.9% / 67% ex

Functions

41 25 exported

Complexity

3.1 avg / 11 max

Call network

41 nodes / 32 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

41 functions

Function	Cyclo	Coverage
add_rel_pos_coords exp	3	0%
add_set_vels exp	4	0%
add_velocities exp	6	0%
col_motion_metrics exp	2	0%
col_motion_metrics_from_raw exp	2	0%
define_events exp	2	0%

Datasets

Bundled datasets · 3

Name	Class	Rows × Cols	Also ships in
multi_species_metrics	data.frame	257 × 12	–
multi_species_pca_data	data.frame	257 × 4	–
new_species_metrics	data.frame	60 × 16	–

People & History

People (2)

Maintainer (1)

Marina Papadopoulou

Author, Maintainer

Authors (1)

Marina Papadopoulou

Author, Maintainer

Contributors (1)

Simon Garnier

Contributor, Copyright holder

Simon Garnier

Contributor, Copyright holder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
2024-10-10 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
0.1.0
2024-03-26
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-03-26
Total releases: 2 / 2 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 50 KB / 4 files
Download size: 220 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →