R Observatory: Metrics for survivalVignettes version 0.1.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

survivalVignettes

0.1.6Package record

Survival Analysis Vignettes and Optional Datasets

0packages depend

2.1Kdownloads / year

–test coverage

12/13flavors OK

Overview

About

Maintained by Elizabeth AtkinsonCRAN page ↗GitHub ↗Issues ↗

Vignettes for the 'survival' package. Split from the 'survival' package since the vignettes were getting large. Also, since 'survival' is a recommended package it cannot make use of other packages outside of base+recommended (e.g. 'rmarkdown').

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("survivalVignettes", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("bethatkinson/survivalVignettes")

Development version from bethatkinson/survivalVignettes. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-survivalvignettes

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-survivalVignettes

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-survivalVignettes

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

1ERROR12OK

Check messages

ERRORre-building of vignette outputsr-devel-linux-x86_64-debian-gcc

Error(s) in re-building vignettes:
  ...
--- re-building ‘pseudo.Rmd’ using rmarkdown

Quitting from pseudo.Rmd:277-287 [test3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─survival::survfit(cfit3, newdata = list(x = c("Maintained", "Nonmaintained")))
 2. └─survival:::survfit.coxph(...)
 3.   └─survival:::model.matrix.coxph(object, data = mf)
 4.     └─stats::delete.response(object$terms)
 5.       └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pseudo.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘pseudo.Rmd’

--- re-building ‘ridge.Rmd’ using rmarkdown

Quitting from ridge.Rmd:113-126 [pass5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Ba
...[truncated]...
h diagnostics:
subscript out of bounds
--- failed re-building ‘royston.Rmd’

--- re-building ‘tutorial.Rmd’ using rmarkdown

Quitting from tutorial.Rmd:325-331 [aidscurve]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─survival::survfit(cfit0, newdata = dummy)
 2. └─survival:::survfit.coxphms(cfit0, newdata = dummy)
 3.   ├─stats::model.matrix(object, data = mf)
 4.   └─survival:::model.matrix.coxph(object, data = mf)
 5.     └─stats::delete.response(object$terms)
 6.       └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘pseudo.Rmd’ ‘ridge.Rmd’ ‘royston.Rmd’ ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted

CRAN check page ↗

Slowest check: 1.6 min · r-oldrel-windows-x86_64

Status changes

ERROR12 OK, 1 ERROR2026-10-24
OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08

Show 1 earlier changeHide 1 earlier change

OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.6

README· In the repository, left out of the releaseVignettesYes · 5 · dynamicNEWSNoCitation fileNo

Help pages: 1includes a package overview page
Examples that run: no examples
Exported functions with examples: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 0%

Vignettes (5)

How these are measured

Downloads

2.1K

CRAN downloads in the past year

Rank #23,095 · ~6/day · ~177/mo

Releases R versions

Daily download trend is not available in this view yet.

19630 days

57090 days

2.1K1 year

Compare downloads with other packages →

Also on70 r2u5 autocran

How downloads are counted

Repository

bethatkinson/survivalvignettes ↗Account: bethatkinson

3Stars

0Forks

0Open issues

0Open PRs

0Releases

69Commits

3Commit identities

69 commits · Last activity 2026-10-19 · +50% stars, 30d · Default branch at 0.3.1, ahead of CRAN 0.1.6 (checked 2026-10-21)

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 0
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2025-08-11 · 22026-10-06 · 3

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 1 family in the upstream repository

Checks run against github.com/bethatkinson/survivalvignettes on 2026-10-21.

Docs source (2)

Quarto project

GitHub Pages site last deployed 2026-10-19

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing survivalVignettes adds no packages beyond those that come with R.

Depends (2)

R >= 3.5.0survival

Imports (1)

graphics

LinkingTo (0)

none

Suggests (7)

knitr rmarkdown bookdown survey geepack mstate R.rsp

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Elizabeth Atkinson

Maintainer since 0.1.6 (2024), Contributor

Terry M Therneau

Author

Cynthia Crowson

Contributor

Listed in earlier versions (1)

Terry M

no longer listed · 0.1.6

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.6Latest
record
2024-05-03 · current release
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-05-03
Total releases: 1 / 2 yrs
License: LGPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Download size: 644 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("survivalVignettes")

Format

Atkinson, E., Crowson, C., & Therneau, T. M. (2024). survivalVignettes: Survival Analysis Vignettes and Optional Datasets (Version 0.1.6) [Computer software]. https://doi.org/10.32614/CRAN.package.survivalVignettes

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for survivalVignettes version 0.1.6 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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