R Observatory: Metrics for submitr version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

submitr

0.1.0

Scaffold and Submit Computational Jobs to HTC Schedulers

0packages depend

1.1Kdownloads / year

82.4%test coverage

13/13checks pass

Overview

About

Maintained by Erwin LaresFirst published 2026-05-191 releasesCRAN page ↗GitHub ↗

Provides scaffolding tools to help researchers prepare and submit computational jobs to high-throughput computing (HTC) schedulers. Generates the files required to run containerized R analyses on 'HTCondor', including submit files and executable scripts, and wraps the system commands needed to stage files, submit jobs, monitor status, and retrieve results from a CHTC submit node. Provides 'htc_config()' for managing connection details and SSH connection reuse guidance. Works naturally alongside 'containr' for container image management and 'toolero' for dataset splitting and project scaffolding.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("submitr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("erwinlares/submitr")

Development version from erwinlares/submitr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-submitr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-submitr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-submitr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.76

82.4%

Coverage · measured lines

100%

Documentation · exports

4

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-20
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,379 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.1K

CRAN downloads in the past year

Rank #10,895 · ~3/day · ~89/mo

Releases R versions

Daily download trend is not available in this view yet.

18530 days

90090 days

1.1K1 year

Compare downloads with other packages →

Also on22 r2u4 autocran

Repository

GitHub ↗ erwinlares/submitr

1Stars

0Forks

0Open issues

0Open PRs

2Releases

31Commits

1Contributors

31 commits · Last activity 2026-08-14 · 0% stars, 30d

Stars over time

2026-05-21 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/erwinlares/submitr on 2026-08-23.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

renv

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

cli glue readr yaml

LinkingTo (0)

none

Suggests (7)

containr knitr rmarkdown spelling testthat toolero withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Erwin Lares

Author, Maintainer

Authors (1)

Erwin Lares

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

0.1.0Latest
2026-05-19 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-05-19
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Download size: 3.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("submitr")

Format

Lares, E. (2026). submitr: Scaffold and Submit Computational Jobs to HTC Schedulers (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.submitr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for submitr version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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