This package was removed from CRAN on 2020-03-31. Its history is shown below.

Reason: installation problems were not corrected in time

Details below reflect version 0.1.2, its last release before removal.

starmie

0.1.2

Population Structure Model Inference and Visualisation

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Stuart Lee1 releasesCRAN page ↗GitHub ↗

Data structures and methods for manipulating output of genetic population structure clustering algorithms. 'starmie' can parse output from 'STRUCTURE' (see https://pritchardlab.stanford.edu/structure.html for details) or 'ADMIXTURE' (see https://www.genetics.ucla.edu/software/admixture/ for details). 'starmie' performs model selection via information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/starmie/starmie_0.1.2.tar.gz"
pkgFile <- "starmie_0.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("sa-lee/starmie")

Development version from sa-lee/starmie. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.04

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMEYes · 1,856 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: 100%
Return-value docs: 25%
References docs: 0%

Downloads

starmie Releases R versions

Daily download trend is not available in this view yet.

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Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.3.0

Imports (18)

data.table readr stringr tidyr purrr ggplot2 iterpc combinat label.switching proxy MCL gridExtra ggdendro ggrepel MCMCpackparallelmethodsstats

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Stuart Lee

Maintainer, Author

Authors (2)

Stuart Lee

Maintainer, Author

Gerry Tonkin-Hill

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-03-31
installation problems were not corrected in time
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.1.2
2016-11-07
R
R 3.3.0 released · 2016-05-03

Package metadata

Total releases: 1
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.3.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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