R Observatory: Metrics for spatsurv version 2.0-1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

spatsurv

2.0-1Package record

Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models

0packages depend

8.4Kdownloads / year

21.8%test coverage

11/13flavors OK

Overview

About

Maintained by Benjamin M. TaylorCRAN page ↗

Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models. See Benjamin M. Taylor, Barry S. Rowlingson (2017) doi:10.18637/jss.v077.i04.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("spatsurv", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-spatsurv

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-spatsurv

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-spatsurv

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Benjamin M. Taylor <benjamin.taylor.software@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M."),
                      family = "Taylor",
                      role = c("aut", "cre"),
                      email = "benjamin.taylor.software@gmail.com"),
               person(given = c("Barry", "S.", "Rowlingson", "Additional", "contributions", "Ziyu"),
                      family = "Zheng",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 10.3 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-08
ERROR11 OK, 1 NOTE, 1 ERROR2026-06-07
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0-1

READMEYes · 30 wordsVignettesNoNEWSYes · 0% structuredCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Cites a JSS article

Help pages: 169includes a package overview page
Examples that run: 67%2 run in a plain check · 1 never run
Exported functions with examples: 1%
Documented parameters: 99%
Return-value docs: 95%
Help pages citing references: 10%

How these are measured

Downloads

8.4K

CRAN downloads in the past year

Rank #5,608 · ~23/day · ~698/mo

Releases R versions

Daily download trend is not available in this view yet.

52830 days

1.5K90 days

8.4K1 year

Compare downloads with other packages →

Also on71 r2u4 autocran143 c2d4u

How downloads are counted

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing spatsurv adds 43 packages (32 with compiled code, 54 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, sp 4.3 MB.

Depends (1)

R >= 2.10

Imports (14)

survivalsp spatstat.explore spatstat.geom spatstat.random raster iterators fieldsMatrixstringr sf RColorBrewermethodslubridate

LinkingTo (0)

none

Suggests (1)

rgl

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (2)

Benjamin M. Taylor

Barry S. Rowlingson Additional contributions Ziyu Zheng

· added in 0.9-12

Maintainer since 0.9 (2013)

Listed in earlier versions (1)

Barry S. Rowlingson

no longer listed · 0.9 to 0.9-11

Releases (24)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.0-1Latest
record
2023-10-19 · current release · diff ↗
2.0
record
2023-10-02 · diff ↗ ·
removed 4 exports
getBackground, spplot1, spplot_compare, urlTemplate
R
R 4.3.0 released · 2023-04-21
1.8-2
record
2022-11-22 · diff ↗
unarchivedReturned to CRAN
2022-05-06
1.8
record
2022-05-06 · diff ↗
archivedRemoved from CRAN
2022-05-04
requires archived package 'RandomFields'
R
R 4.2.0 released · 2022-04-22
1.7
record
2022-03-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
unarchivedReturned to CRAN
2021-03-31
1.6
record
2021-03-31 · diff ↗
archivedRemoved from CRAN
2021-03-29
check problems were not corrected in time

Show 26 earlier eventsHide 26 earlier events

1.5
record
2020-04-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.4
record
2020-03-05 · diff ↗ ·
added 3 exports
TwoWayHazAdditive, baselinehazard_multiWay, rootWeibullHaz
R
R 3.6.0 released · 2019-04-26
1.2
record
2018-05-22 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.1
record
2017-03-23 · diff ↗
1.0
record
2017-03-07 · diff ↗
0.9-14
record
2016-10-24 · diff ↗ ·
added 4 exports
blockDiag, fixParHaz, insert, multiWayHaz
0.9-12
record
2016-06-29 · diff ↗ ·
added 14 exports
Independent, PsplineHaz, baseHazST, boxplotRisk, derivindepGaussianpriorST, derivpsplineprior, gamma2risk, imputationModel, indepGaussianpriorST, omegapriorGaussST, optifix, psplineRWprior, psplineprior, timevaryingPL
R
R 3.3.0 released · 2016-05-03
0.9-11
record
2015-10-21 · diff ↗ ·
added 5 exports
Summarise, getOptCellwidth, getbb, showGrid, textSummary
0.9-10
record
2015-07-10 · diff ↗ ·
added 2 exports
getBackground, getgrd
0.9-9
record
2015-06-03 · diff ↗ ·
added 27 exports
B, Bspline.construct, CSplot, GammaFromY_SPDE, SPDE, SPDEprec, YFromGamma_SPDE, allocate, alpha, cumulativeBspline.construct, getBbasis, getGrid, gridY_polygonal, logPosterior_SPDE, logPosterior_polygonal, midpts, neighLocs, neighOrder, polyadd, polymult, proposalVariance_SPDE, proposalVariance_polygonal, reconstruct.bs, setupPrecMatStruct, spplot1, spplot_compare, urlTemplate
R
R 3.2.0 released · 2015-04-16
0.9-8
record
2014-11-13 · diff ↗ ·
added 2 exports
BsplineHaz, survspatNS
0.9-7
record
2014-09-12 · diff ↗ ·
added 1 export
getleneta
0.9-6
record
2014-07-15 · diff ↗ ·
removed 29 exports
basehazard.exp, basehazard.weibull, cumbasehazard.exp, cumbasehazard.weibull, densityquantile.exp, densityquantile.weibull, derivlogindepGaussianprior, exp_ltar, gensens, getomegatrans, gradbasehazard.exp, gradbasehazard.weibull, gradcumbasehazard.exp, gradcumbasehazard.weibull, hessbasehazard.exp, hessbasehazard.weibull, hesscumbasehazard.exp, hesscumbasehazard.weibull, invtransformestimates.exp, invtransformestimates.weibull, labelomegamatrix, logindepGaussianprior, logindepnormalprior, logposterior_exponential_nospat, proposalvariance_exponential_nospat, survexpon, transformestimates.exp, transformestimates.weibull, weibull_ltar

added 28 exports
.onAttach, Et_PP, MCE, NonSpatialLogLikelihood_or_gradient, basehazard, cumbasehazard, densityquantile, derivindepGaussianprior, distinfo, exponentialHaz, gencens, getcov, gompertzHaz, gradbasehazard, gradcumbasehazard, guess_t, hazardexceedance, hessbasehazard, hesscumbasehazard, indepGaussianprior, invtransformweibull, makehamHaz, maxlikparamPHsurv, priorposterior, spatsurvVignette, tpowHaz, transformweibull, weibullHaz
0.9-5
record
2014-06-25 · diff ↗ ·
removed 21 exports
basehaz.exp, basehaz.weibull, density_exp, density_weibull, densityquantile_exp, densityquantile_weibull, estimateY.exp, estimateY.weibull, hazard_exp, hazard_weibull, logposterior.exp, logposterior.exp.gridded, logposterior.gamma, logposterior.weibull, logposterior.weibull.gridded, proposalvariance.exp, proposalvariance.exp.gridded, proposalvariance.weibull, proposalvariance.weibull.gridded, survival_exp, survival_weibull

added 24 exports
basehazard.exp, basehazard.weibull, cumbasehazard.exp, cumbasehazard.weibull, density_PP, densityquantile.exp, densityquantile.weibull, densityquantile_PP, estimateY, gradbasehazard.exp, gradbasehazard.weibull, gradcumbasehazard.exp, gradcumbasehazard.weibull, hazard_PP, hessbasehazard.exp, hessbasehazard.weibull, hesscumbasehazard.exp, hesscumbasehazard.weibull, logPosterior, logPosterior_gridded, proposalVariance, proposalVariance_gridded, setupHazard, survival_PP
0.9-3
record
2014-06-16 · diff ↗ ·
added 21 exports
basehaz.exp, basehaz.weibull, baselinehazard, checkSurvivalData, density_exp, density_weibull, densityquantile_exp, densityquantile_weibull, fixedpars, frailtylag1, getomegatrans, getsurvdata, hazard_exp, hazard_weibull, hazardpars, labelomegamatrix, posteriorcov, randompars, spatialpars, survival_exp, survival_weibull
0.9-2
record
2014-05-13 · diff ↗ ·
removed 2 exports
mcmcProgressTk, quadapprox

added 6 exports
EvalCov, ExponentialCovFct, QuadApprox, SpikedExponentialCovFct, fixmatrix, getparranges
R
R 3.1.0 released · 2014-04-10
0.9-1
record
2014-03-27 · diff ↗ ·
added 18 exports
FFTgrid, GammafromY, YfromGamma, circulant, circulantij, grid2spdf, grid2spix, grid2spts, gridY, inference.control, invtransformestimates.exp, invtransformestimates.weibull, logposterior.exp.gridded, logposterior.weibull.gridded, plotsurv, proposalvariance.exp.gridded, proposalvariance.weibull.gridded, surv3d
0.9
record
2014-01-14
R
R 3.0.0 released · 2013-04-03

Package metadata

First published: 2014-01-14
Total releases: 24 / 12 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 211 KB / 2 files
Download size: 355 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("spatsurv")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v077.i04.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for spatsurv version 2.0-1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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