snplist

0.18.3

Tools to Create Gene Sets

1packages depend

3.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Alexander SibleyFirst published 2013-11-2610 releasesCRAN page ↗

A set of functions to create SQL tables of gene and SNP information and compose them into a SNP Set, for example to export to a PLINK set.

Install

R (CRAN)Ubuntu (r2u)

install.packages("snplist", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-snplist

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 5.3 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Check history

OK2026-07-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-27
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-21
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 8 earlier snapshots

ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-01
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-30
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-17
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-15
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 83%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 17%

Downloads

3.1K

CRAN downloads in the past year

Rank #12,509 · ~8/day · ~255/mo

Releases R versions

Daily download trend is not available in this view yet.

30030 days

85490 days

3.1K1 year

Compare downloads with other packages →

Also on392 r2u52 c2d4u

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.0.0RSQLite

Imports (5)

biomaRt Rcpp R.utils DBImethods

LinkingTo (1)

Rcpp

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

groupedSurv

Code & Tests

People & History

People (3)

Maintainer (1)

Alexander Sibley

Author, Maintainer

Authors (3)

Alexander Sibley

Author, Maintainer

Kouros Owzar

Author · added in 0.18.3

Chanhee Yi

Author

Listed in earlier versions (1)

and Kouros Owzar

no longer listed · 0.12 to 0.18.2

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.18.3Latest
2025-04-21 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.18.2
2021-10-09 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.18.1
2017-12-11 · diff ↗
0.18
2017-08-14 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.17
2016-12-14 · diff ↗
0.16
2016-10-28 · diff ↗

Show 8 earlier events

R
R 3.3.0 released · 2016-05-03
0.15
2015-11-20 · diff ↗
0.14
2015-09-21 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.13
2014-12-10 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.12
2013-11-26
R
R 3.0.0 released · 2013-04-03

Package metadata

First published: 2013-11-26
Total releases: 10 / 13 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.0.0
Download size: 230 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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