R Observatory: Metrics for snpRF version 0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2019-07-02. Its history is shown below.

Reason: check errors were not corrected in time. LTO mismatches

Details below reflect version 0.4, its last release before removal.

snpRF

0.4

Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Greg Jenkins2 releasesCRAN page ↗

A modification of Breiman and Cutler's classification random forests modified for SNP (Single Nucleotide Polymorphism) data (based on randomForest v4.6-7) to prevent X-chromosome SNP variable importance bias compared to autosomal SNPs by simulating the process of X chromosome inactivation. Classification is based on a forest of trees using random subsets of SNPs and other variables as inputs.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/snpRF/snpRF_0.4.tar.gz"
pkgFile <- "snpRF_0.4.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.4) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

1

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 87%
Return-value docs: 100%
References docs: 50%

Downloads

snpRF Releases R versions

Daily download trend is not available in this view yet.

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Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (2)

R >= 2.5.0stats

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

RColorBrewerMASS

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (6)

Other (6)

Fortran original by Leo Breiman

Contributor

Adele Cutler

Contributor

R port by Andy Liaw

Contributor

Matthew Wiener. Modifications of randomForest v 4.6-7 for SNPs by Greg Jenkins based on a method developed by Stacey Winham

Contributor

Greg Jenkins

Contributor

Joanna Biernacka.

Contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2019-07-02
check errors were not corrected in time LTO mismatches
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
0.3
2014-12-31 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.4
2014-01-20
R
R 3.0.0 released · 2013-04-03

Package metadata

Total releases: 2
License: GPL (>= 2) OSI
Minimum R: ≥ 2.5.0
Bundled data: 4.4 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("snpRF")

Format

Breiman, F. o. b. L., Cutler, A., Liaw, R. p. b. A., Winham, M. W. M. o. r. v. 4. 6. f. S. b. G. J. b. o. a. m. d. b. S., Jenkins, G., & Biernacka., J. (n.d.). snpRF: Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias (Version 0.4) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=snpRF

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for snpRF version 0.4 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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