R Observatory: Metrics for smidm version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

smidm

1.0Package record

Statistical Modelling for Infectious Disease Management

0packages depend

7.1Kdownloads / year

97.2%test coverage

13/13flavors OK

Overview

About

Maintained by Sonja JäckleCRAN page ↗Repository ↗Issues ↗

Statistical models for specific coronavirus disease 2019 use cases at German local health authorities. All models of Statistical modelling for infectious disease management 'smidm' are part of the decision support toolkit in the 'EsteR' project. More information is published in Sonja Jäckle, Rieke Alpers, Lisa Kühne, Jakob Schumacher, Benjamin Geisler, Max Westphal "'EsteR' – A Digital Toolkit for COVID-19 Decision Support in Local Health Authorities" (2022) doi:10.3233/SHTI220799 and Sonja Jäckle, Elias Röger, Volker Dicken, Benjamin Geisler, Jakob Schumacher, Max Westphal "A Statistical Model to Assess Risk for Supporting COVID-19 Quarantine Decisions" (2021) doi:10.3390/ijerph18179166.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("smidm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-smidm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-smidm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-smidm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.8 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
NOTE12 OK, 1 NOTE2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0

READMEYes · 333 wordsVignettesYes · 5 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 14
Examples that run: 100%11 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 50%

Vignettes (5)

How these are measured

Downloads

7.1K

CRAN downloads in the past year

Rank #8,915 · ~19/day · ~588/mo

Releases R versions

Daily download trend is not available in this view yet.

35630 days

1.1K90 days

7.1K1 year

Compare downloads with other packages →

Also on69 r2u6 autocran

How downloads are counted

Repository

gitlab.cc-asp.fraunhofer.de/ester/smidm ↗

Responsiveness

not measured

How these are measured

PracticesBeta

Repository gitlab.cc-asp.fraunhofer.de/ester/smidm is linked, but repository-practices checks have not run for it yet. Checks are GitHub-only for now.

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing smidm adds 18 packages (12 with compiled code, 8.1 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppArmadillo 1.0 MB, vctrs 1.0 MB.

Depends (0)

none

Imports (4)

dplyr extraDistrstatsmethods

LinkingTo (0)

none

Suggests (9)

testthat covr xml2 knitr rmarkdown tidyr hdrcde ggplot2 scales

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (8)

Sonja Jäckle

Author, Maintainer since 1.0 (2022)

Author

Author

Author

Author

Contributor

Copyright holder

Copyright holder

Listed in earlier versions (1)

Hong Phuc

no longer listed · 1.0

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.0Latest
record
2022-08-27 · current release
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-08-27
Total releases: 1 / 4 yrs
License: BSD_3_clause + file LICENSE OSI
Download size: 168 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("smidm")

Format

Jäckle, S., Fraunhofer ITWM, Fraunhofer MEVIS, Alpers, R., Grimm, S., Lucker, A., Truong, H. P., & Westphal, M. (2022). smidm: Statistical Modelling for Infectious Disease Management (Version 1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.smidm

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for smidm version 1.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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