R Observatory: Metrics for sleepr version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

sleepr

0.3.1

Analyse Activity and Sleep Behaviour

0packages depend

3.8Kdownloads / year

86.2%test coverage

13/13checks pass

Overview

About

Maintained by Quentin GeissmannFirst published 2018-10-302 releasesCRAN page ↗GitHub ↗

Use behavioural variables to score activity and infer sleep from bouts of immobility. It is primarily designed to score sleep in fruit flies from Drosophila Activity Monitor (TriKinetics) and Ethoscope data. It implements sleep scoring using the "five-minute rule" (Hendricks et al. (2000) DOI:10.1016/S0896-6273(00)80877-6), activity classification for Ethoscopes (Geissmann et al. (2017) DOI:10.1371/journal.pbio.2003026) and a new algorithm to detect when animals are dead.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("sleepr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rethomics/sleepr")

Development version from rethomics/sleepr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-sleepr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-sleepr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-sleepr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.68

86.2%

Coverage · measured lines

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 50%

Downloads

3.8K

CRAN downloads in the past year

Rank #14,013 · ~10/day · ~318/mo

Releases R versions

Daily download trend is not available in this view yet.

15630 days

72990 days

3.8K1 year

Compare downloads with other packages →

Also on91 r2u11 autocran

Repository

GitHub ↗ rethomics/sleepr

6Stars

3Forks

3Open issues

0Open PRs

0Releases

1,235Commits

1Contributors

rbiological-data-analysisneuroscience

1,235 commits · Last activity 2021-10-22

Stars over time

2023-11-09 · 62026-07-07 · 6

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/rethomics/sleepr on 2026-08-16.

Continuous integration (1)

Travis CI

Reproducibility and dev environment (1)

Makefile

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Git structural (1)

Submodules

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.00behavr

Imports (1)

data.table

LinkingTo (0)

none

Suggests (3)

testthat covr knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Quentin Geissmann

Author, Maintainer

Authors (1)

Quentin Geissmann

Author, Maintainer

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.3.1Latest
2025-03-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.3.0
2018-10-30
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-10-30
Total releases: 2 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.00
Download size: 11 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("sleepr")

Format

Geissmann, Q. (2025). sleepr: Analyse Activity and Sleep Behaviour (Version 0.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.sleepr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sleepr version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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