R Observatory: Metrics for sleepr version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

sleepr

0.3.1Package record

Analyse Activity and Sleep Behaviour

0packages depend

3.4Kdownloads / year

86.2%test coverage

13/13flavors OK

Overview

About

Maintained by Quentin GeissmannCRAN page ↗GitHub ↗Issues ↗

Use behavioural variables to score activity and infer sleep from bouts of immobility. It is primarily designed to score sleep in fruit flies from Drosophila Activity Monitor (TriKinetics) and Ethoscope data. It implements sleep scoring using the "five-minute rule" (Hendricks et al. (2000) DOI:10.1016/S0896-6273(00)80877-6), activity classification for Ethoscopes (Geissmann et al. (2017) DOI:10.1371/journal.pbio.2003026) and a new algorithm to detect when animals are dead.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("sleepr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rethomics/sleepr")

Development version from rethomics/sleepr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-sleepr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-sleepr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-sleepr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 4
Examples that run: 100%3 run in a plain check
Exported functions with examples: 75%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 50%

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #13,869 · ~9/day · ~283/mo

Releases R versions

Daily download trend is not available in this view yet.

32530 days

85090 days

3.4K1 year

Compare downloads with other packages →

Also on86 r2u3 autocran

How downloads are counted

Repository

rethomics/sleepr ↗Organization: rethomics

6Stars

2Forks

3Open issues

0Open PRs

0Releases

1,242Commits

2Commit identities

rbiological-data-analysisneuroscience

1,242 commits · Last activity 2026-10-07 · Default branch at 0.4.0, ahead of CRAN 0.3.1 (checked 2026-10-22)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 0
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2023-11-09 · 62026-07-07 · 6

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/rethomics/sleepr on 2026-10-22.

Continuous integration (1)

Travis CI (config file)

Docs source (1)

README.Rmd

Reproducibility and dev environment (1)

Makefile

CRAN release process (1)

cran-comments.md

Show all practicesHide 2 practices

Lint, format, editor (1)

RStudio project

Git structural (1)

Submodules

How this is detected·Detection ruleset v4 (2026-10-20)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Claude Codefirst seen on or before 2026-10-05
Commits: at least 7 crediting it in the message

Models named in its commits

Claude Opus 5.57 commits · Oct 2026

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing sleepr adds 2 packages (1 with compiled code, 5.7 MB of source tarballs). Heaviest: data.table 5.7 MB, behavr 19 KB.

Depends (2)

R >= 3.00behavr

Imports (1)

data.table

LinkingTo (0)

none

Suggests (3)

testthat covr knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Quentin Geissmann

Author, Maintainer since 0.3.0 (2018)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.3.1Latest
record
2025-03-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.3.0
record
2018-10-30
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-10-30
Total releases: 2 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.00
Download size: 11 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("sleepr")

Format

Geissmann, Q. (2025). sleepr: Analyse Activity and Sleep Behaviour (Version 0.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.sleepr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sleepr version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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